RchiOBHm_Chr2g0142321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017108
Physical Location & Seq
Reverse (-)
59783186 .. 59783528
343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGTCTGTCAAGAAGAGTCTTTCTCTTGACCATGGCGGTGCCGGGAAGGGCGCTGCGGTTACAGCAAAGCGCGGCCGATATGGTCGTTGTTTTTCTTTCATGGAGGTTTCATTAGAACCAGGAAAGTCTCTCAAGGAAATGGATTCAGAGAAGTTGAAGGCTGGGATCAAGAGGTGGGCTAAGGCTGTTGCCGCCTATGCCCGCCAGGTCAGTGGACGGTTTGGAAACTCTCGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.46

Weight (kDa)

10.45

Isoelectric Point (pI)

26.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21305
fragaria_vesca FvH4_6g32890
prunus_persica Prupe.3G053100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142321
rosa_multiflora Rmu_sc0001211.1_g000047
rosa_roxburghii Rroxscaffold_2G00102820 Rroxscaffold_2G00102890
rosa_rugosa Rorug02G0371700
rosa_samantha Rh2AG423700 Rh2BG433300 Rh2CG410500 Rh2DG443200
rosa_wichuraiana Rw2G034720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccII CGCG 1 cut(s) 72
AciI CCGC 5 cut(s) 36, 56, 72, 192, 202
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 73
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 2 cut(s) 118, 204
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 53, 72
AsuC2I CCSGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 231
BbvI GCAGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 120, 206
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 3 cut(s) 54, 73, 192
BlsI GCNGC 3 cut(s) 55, 74, 193
Bme1390I CCNGG 3 cut(s) 43, 120, 206
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 3 cut(s) 43, 120, 206
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 120, 206
BseDI CCNNGG 1 cut(s) 31
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 5 cut(s) 36, 56, 72, 192, 202
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 120, 206
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 72
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 165
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 62, 191, 197
BstNI CCWGG 2 cut(s) 120, 206
BstSCI CCNGG 3 cut(s) 41, 118, 204
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 212
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 2 cut(s) 53, 72
CviAII CATG 2 cut(s) 32, 100
CviJI RGCY 5 cut(s) 75, 161, 179, 185, 237
CviKI_1 RGCY 5 cut(s) 75, 161, 179, 185, 237
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 118, 204
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 35, 103
FaiI YATR 4 cut(s) 33, 81, 101, 198
FatI CATG 2 cut(s) 31, 99
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 54, 73, 192
Fsp4HI GCNGC 3 cut(s) 54, 73, 192
GlaI GCGC 2 cut(s) 52, 71
GluI GCNGC 3 cut(s) 54, 73, 192
GsaI CCCAGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 42
HhaI GCGC 2 cut(s) 53, 72
Hin1II CATG 2 cut(s) 35, 103
Hin6I GCGC 2 cut(s) 51, 70
HinP1I GCGC 2 cut(s) 51, 70
HinfI GANTC 2 cut(s) 16, 143
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 10, 26, 169
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 40, 151
HpyCH4III ACNGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 191, 197
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 35, 103
HspAI GCGC 2 cut(s) 51, 70
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 6 cut(s) 55, 105, 132, 147, 191, 218
Lsp1109I GCAGC 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 97, 165
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 3 cut(s) 43, 120, 206
MvaI CCWGG 2 cut(s) 120, 206
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 62, 191, 197
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 31
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 35, 103
NlaIV GGNNCC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 55, 74, 193
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 118, 204
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 2 cut(s) 118, 204
PspN4I GGNNCC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 3 cut(s) 54, 73, 192
Sau3AI GATC 1 cut(s) 165
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 43, 120, 206
SetI ASST 3 cut(s) 108, 176, 210
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 5 cut(s) 36, 56, 72, 192, 202
StyD4I CCNGG 3 cut(s) 41, 118, 204
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 219
TauI GCSGC 2 cut(s) 75, 194
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 88, 99
TspRI CASTG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.