Rorug02G0371700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017108
Physical Location & Seq
Forward (+)
47410659 .. 47413699
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0371700.1

Sequence Viewer

Length: 693 bp
ATGCAAGGGAATTCGAGTTCAAAATTGAATTTTGTGTGGGATTATGAGTCCAGAATTGTGGGCACATCCACAGAGTGGACAAATGAGAAGCACAGATCATATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCAGGCATTTGCAGGACTGCCATCCACAAAAGTATGTTCGGGGGACACATCCATCAGAAGAGTTGCCTTTCAAGACTTGTAATTCTTCTGACCAGGTCAGGGAGTCAAATCTGAAGATCATCTCTCCTAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTTACTATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTTATAAGGGGACCCACCTAAGAAGGAAACCGACCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAAAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTCGGGTCAGAACTTTGTGGATGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAAGAGCTTTCAATGGCCCATAATGCTCCCTCCGGAAGAGAAGAACAAGGGCATCATCAGTTGCTATTAGAGCACCGTGAGAGCTTCATCTGTCCAAAATTTATCTTCACTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.21

Weight (kDa)

7.22

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21305
fragaria_vesca FvH4_6g32890
prunus_persica Prupe.3G053100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142321
rosa_multiflora Rmu_sc0001211.1_g000047
rosa_roxburghii Rroxscaffold_2G00102820 Rroxscaffold_2G00102890
rosa_rugosa Rorug02G0371700
rosa_samantha Rh2AG423700 Rh2BG433300 Rh2CG410500 Rh2DG443200
rosa_wichuraiana Rw2G034720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 1 cut(s) 300
AclI AACGTT 1 cut(s) 312
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 5 cut(s) 10, 28, 106, 521, 671
AcuI CTGAAG 1 cut(s) 278
AdeI CACNNNGTG 1 cut(s) 75
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 75, 244
AgsI TTSAA 5 cut(s) 21, 28, 217, 420, 585
AjnI CCWGG 2 cut(s) 146, 237
AleI CACNNNNGTG 1 cut(s) 399
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 3 cut(s) 511, 580, 657
AluI AGCT 3 cut(s) 511, 580, 657
Alw21I GWGCWC 1 cut(s) 648
AlwI GGATC 1 cut(s) 345
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 2 cut(s) 326, 588
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 5 cut(s) 10, 28, 106, 521, 671
AspA2I CCTAGG 1 cut(s) 272
AspS9I GGNCC 3 cut(s) 327, 363, 589
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 543
AvaII GGWCC 1 cut(s) 363
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 1 cut(s) 448
BccI CCATC 3 cut(s) 174, 205, 328
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BciT130I CCWGG 2 cut(s) 148, 239
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 1 cut(s) 331
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 1 cut(s) 462
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 3 cut(s) 148, 239, 331
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 3 cut(s) 327, 363, 589
BmiI GGNNCC 3 cut(s) 329, 364, 365
BmrFI CCNGG 3 cut(s) 148, 239, 331
BmsI GCATC 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 272, 329
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 244
Bse3DI GCAATG 1 cut(s) 574
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 2 cut(s) 148, 239
BseDI CCNNGG 2 cut(s) 272, 329
BseGI GGATG 5 cut(s) 65, 166, 193, 339, 496
BseLI CCNNNNNNNGG 2 cut(s) 75, 244
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 2 cut(s) 402, 411
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 328, 590
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 2 cut(s) 331, 606
BslFI GGGAC 2 cut(s) 202, 376
BslI CCNNNNNNNGG 2 cut(s) 75, 244
BsmFI GGGAC 2 cut(s) 202, 376
BsnI GGCC 2 cut(s) 328, 590
Bsp1286I GDGCHC 2 cut(s) 65, 648
Bsp13I TCCGGA 1 cut(s) 605
Bsp143I GATC 4 cut(s) 95, 261, 337, 571
BspACI CCGC 1 cut(s) 300
BspANI GGCC 2 cut(s) 328, 590
BspCNI CTCAG 2 cut(s) 401, 410
BspEI TCCGGA 1 cut(s) 605
BspLI GGNNCC 3 cut(s) 329, 364, 365
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 574
BssECI CCNNGG 2 cut(s) 272, 329
BssMI GATC 4 cut(s) 95, 261, 337, 571
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 148, 239
Bst4CI ACNGT 2 cut(s) 518, 650
Bst6I CTCTTC 3 cut(s) 198, 565, 604
BstDEI CTNAG 5 cut(s) 112, 371, 388, 397, 690
BstF5I GGATG 5 cut(s) 65, 166, 193, 339, 496
BstKTI GATC 4 cut(s) 98, 264, 340, 574
BstMBI GATC 4 cut(s) 95, 261, 337, 571
BstMWI GCNNNNNNNGC 2 cut(s) 596, 643
BstNI CCWGG 2 cut(s) 148, 239
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 146, 237, 329
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 328, 590
BtsCI GGATG 5 cut(s) 65, 166, 193, 339, 496
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 463, 681
Cfr13I GGNCC 3 cut(s) 327, 363, 589
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 435
CviJI RGCY 7 cut(s) 328, 511, 538, 548, 580, 590, 657
CviKI_1 RGCY 7 cut(s) 328, 511, 538, 548, 580, 590, 657
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 5 cut(s) 112, 371, 388, 397, 690
DpnI GATC 4 cut(s) 97, 263, 339, 573
DpnII GATC 4 cut(s) 95, 261, 337, 571
DraIII CACNNNGTG 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 198, 565, 604
EarI CTCTTC 3 cut(s) 198, 565, 604
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 327, 363
EcoRI GAATTC 2 cut(s) 10, 521
EcoRII CCWGG 2 cut(s) 146, 237
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 1 cut(s) 438
FaqI GGGAC 2 cut(s) 202, 376
FatI CATG 1 cut(s) 434
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 5 cut(s) 52, 153, 180, 346, 503
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 462
HaeIII GGCC 2 cut(s) 328, 590
HapII CCGG 2 cut(s) 331, 606
Hin1II CATG 1 cut(s) 438
HinfI GANTC 5 cut(s) 47, 248, 305, 446, 686
HpaII CCGG 2 cut(s) 331, 606
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 5 cut(s) 202, 235, 258, 391, 480
Hpy188III TCNNGA 5 cut(s) 51, 217, 443, 575, 606
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 518, 650
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 4, 157, 434, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 643
HpyF3I CTNAG 5 cut(s) 112, 371, 388, 397, 690
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 438
KflI GGGWCCC 1 cut(s) 363
Kpn2I TCCGGA 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 95, 261, 337, 571
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 634
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 97, 263, 339, 573
MboI GATC 4 cut(s) 95, 261, 337, 571
MboII GAAGA 7 cut(s) 215, 222, 271, 552, 621, 626, 670
MhlI GDGCHC 2 cut(s) 65, 648
MluCI AATT 9 cut(s) 10, 23, 28, 54, 106, 134, 226, 521, 671
MlyI GAGTC 2 cut(s) 56, 257
MnlI CCTC 4 cut(s) 397, 487, 497, 613
MroI TCCGGA 1 cut(s) 605
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 331, 606
MspR9I CCNGG 3 cut(s) 148, 239, 331
MvaI CCWGG 2 cut(s) 148, 239
MwoI GCNNNNNNNGC 2 cut(s) 596, 643
NciI CCSGG 1 cut(s) 331
NdeII GATC 4 cut(s) 95, 261, 337, 571
NlaIII CATG 1 cut(s) 438
NlaIV GGNNCC 3 cut(s) 329, 364, 365
NspI RCATGY 1 cut(s) 438
OliI CACNNNNGTG 1 cut(s) 399
PfeI GAWTC 3 cut(s) 305, 446, 686
PflFI GACNNNGTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 2 cut(s) 55, 256
PpsI GAGTC 2 cut(s) 55, 256
PpuMI RGGWCCY 1 cut(s) 363
PsiI TTATAA 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 146, 237
PspGI CCWGG 2 cut(s) 146, 237
PspN4I GGNNCC 3 cut(s) 329, 364, 365
PspPI GGNCC 3 cut(s) 327, 363, 589
PspPPI RGGWCCY 1 cut(s) 363
PstI CTGCAG 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 4 cut(s) 95, 261, 337, 571
Sau96I GGNCC 3 cut(s) 327, 363, 589
SchI GAGTC 2 cut(s) 56, 257
ScrFI CCNGG 3 cut(s) 148, 239, 331
SduI GDGCHC 2 cut(s) 65, 648
SetI ASST 8 cut(s) 243, 315, 372, 389, 403, 513, 582, 659
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 9 cut(s) 10, 23, 28, 54, 106, 134, 226, 521, 671
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 146, 237, 329
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 518, 650
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 14
TasI AATT 9 cut(s) 10, 23, 28, 54, 106, 134, 226, 521, 671
TfiI GAWTC 3 cut(s) 305, 446, 686
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 2 cut(s) 463, 688
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 3 cut(s) 294, 514, 649
TspRI CASTG 2 cut(s) 463, 688
Tth111I GACNNNGTC 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 5 cut(s) 10, 28, 106, 521, 671
XceI RCATGY 1 cut(s) 438
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.