Rmu_sc0001211.1_g000047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001211.1
OG0017108
Physical Location & Seq
Forward (+)
169707 .. 169991
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001211.1_g000047.1.cds

Sequence Viewer

Length: 285 bp
atggtacaaccactcgttctgcatctccaaaagcccccgagagccatgtctgtcaagaagagtctttctcttgaccatggcggtgccgggaagggcgttgcggttacagcaaagcgcggccgatatgatcgttgtttttctttcatggaggtttcattagaaccaggaaagtctctcaaggaaatggattcagagaagttgaaggctgggatcaagagatgggctaaggctgttgccgcctatgcccgccaggtcagtggacggtttggaaactctcgtggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.26

Weight (kDa)

10.49

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21305
fragaria_vesca FvH4_6g32890
prunus_persica Prupe.3G053100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142321
rosa_multiflora Rmu_sc0001211.1_g000047
rosa_roxburghii Rroxscaffold_2G00102820 Rroxscaffold_2G00102890
rosa_rugosa Rorug02G0371700
rosa_samantha Rh2AG423700 Rh2BG433300 Rh2CG410500 Rh2DG443200
rosa_wichuraiana Rw2G034720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccII CGCG 1 cut(s) 117
AciI CCGC 5 cut(s) 81, 101, 117, 237, 247
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 118
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 2 cut(s) 163, 249
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 37
BanI GGYRCC 1 cut(s) 83
BauI CACGAG 1 cut(s) 276
BccI CCATC 1 cut(s) 213
BciT130I CCWGG 2 cut(s) 165, 251
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 177
BisI GCNGC 2 cut(s) 118, 237
BlsI GCNGC 2 cut(s) 119, 238
Bme1390I CCNGG 3 cut(s) 88, 165, 251
BmeT110I CYCGRG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 88, 165, 251
BmsI GCATC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 52, 84
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 76
BseBI CCWGG 2 cut(s) 165, 251
BseDI CCNNGG 1 cut(s) 76
BseX3I CGGCCG 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 2 cut(s) 127, 210
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 5 cut(s) 81, 101, 117, 237, 247
BspANI GGCC 1 cut(s) 120
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 127, 210
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 165, 251
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 2 cut(s) 130, 213
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 2 cut(s) 127, 210
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 107, 236, 242
BstNI CCWGG 2 cut(s) 165, 251
BstSCI CCNGG 3 cut(s) 86, 163, 249
BstUI CGCG 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 257
BstZI CGGCCG 1 cut(s) 118
BsuRI GGCC 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 5
CviAII CATG 3 cut(s) 46, 77, 145
CviJI RGCY 7 cut(s) 34, 44, 120, 206, 224, 230, 282
CviKI_1 RGCY 7 cut(s) 34, 44, 120, 206, 224, 230, 282
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 129, 212
DpnII GATC 2 cut(s) 127, 210
EaeI YGGCCR 1 cut(s) 118
EagI CGGCCG 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EclXI CGGCCG 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 163, 249
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 3 cut(s) 49, 80, 148
FaiI YATR 5 cut(s) 47, 78, 126, 146, 243
FatI CATG 3 cut(s) 45, 76, 144
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 2 cut(s) 118, 237
Fsp4HI GCNGC 2 cut(s) 118, 237
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 118, 237
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 120
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 49, 80, 148
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 2 cut(s) 61, 188
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 55, 71, 214
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 85, 196
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 236, 242
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 3 cut(s) 49, 80, 148
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 127, 210
LpnPI CCDG 6 cut(s) 100, 150, 177, 192, 236, 263
LweI GCATC 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 129, 212
MboI GATC 2 cut(s) 127, 210
MboII GAAGA 1 cut(s) 70
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 3 cut(s) 88, 165, 251
MvaI CCWGG 2 cut(s) 165, 251
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 107, 236, 242
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 76
NdeII GATC 2 cut(s) 127, 210
NlaIII CATG 3 cut(s) 49, 80, 148
NlaIV GGNNCC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 119, 238
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 163, 249
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 2 cut(s) 163, 249
PspN4I GGNNCC 1 cut(s) 85
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 81
SatI GCNGC 2 cut(s) 118, 237
Sau3AI GATC 2 cut(s) 127, 210
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 88, 165, 251
SetI ASST 2 cut(s) 153, 255
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 5 cut(s) 81, 101, 117, 237, 247
StyD4I CCNGG 3 cut(s) 86, 163, 249
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 264
TauI GCSGC 2 cut(s) 120, 239
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 133, 144
TspRI CASTG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.