Rw2G034720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017108
Physical Location & Seq
Reverse (-)
57161645 .. 57161887
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034720.1

Sequence Viewer

Length: 243 bp
ATGTCTGTCAAGAAGAGTCTTTCTCTTGACCATGGCGGTGCCGGGAAGGGCGTTGCGGACGTTACAGCAAAGCGCGGCCGATATGATCGTTGTTTTTCTTTCATGGAGGTTTCATTAGAACCAGGAAAGTCTCTCAAGGAAATGGATTCAGAGAAGTTGAAGGCTGGGATCAAGAGGTGGGCTAAGGCTGTTGCCGCCTATGCCCGCCAGGTCAGTGGACGGTTTGGAAACTCTCGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

10.14

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21305
fragaria_vesca FvH4_6g32890
prunus_persica Prupe.3G053100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142321
rosa_multiflora Rmu_sc0001211.1_g000047
rosa_roxburghii Rroxscaffold_2G00102820 Rroxscaffold_2G00102890
rosa_rugosa Rorug02G0371700
rosa_samantha Rh2AG423700 Rh2BG433300 Rh2CG410500 Rh2DG443200
rosa_wichuraiana Rw2G034720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccII CGCG 1 cut(s) 75
AciI CCGC 5 cut(s) 36, 56, 75, 195, 205
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 76
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 121, 207
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 234
BciT130I CCWGG 2 cut(s) 123, 209
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 2 cut(s) 76, 195
BlsI GCNGC 2 cut(s) 77, 196
Bme1390I CCNGG 3 cut(s) 43, 123, 209
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 3 cut(s) 43, 123, 209
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 123, 209
BseDI CCNNGG 1 cut(s) 31
BseX3I CGGCCG 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 85, 168
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 5 cut(s) 36, 56, 75, 195, 205
BspANI GGCC 1 cut(s) 78
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 85, 168
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 123, 209
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 88, 171
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 85, 168
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 194, 200
BstNI CCWGG 2 cut(s) 123, 209
BstSCI CCNGG 3 cut(s) 41, 121, 207
BstUI CGCG 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 215
BstZI CGGCCG 1 cut(s) 76
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 75
CviAII CATG 2 cut(s) 32, 103
CviJI RGCY 5 cut(s) 78, 164, 182, 188, 240
CviKI_1 RGCY 5 cut(s) 78, 164, 182, 188, 240
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 87, 170
DpnII GATC 2 cut(s) 85, 168
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 121, 207
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 35, 106
FaiI YATR 4 cut(s) 33, 84, 104, 201
FatI CATG 2 cut(s) 31, 102
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 76, 195
Fsp4HI GCNGC 2 cut(s) 76, 195
GlaI GCGC 1 cut(s) 74
GluI GCNGC 2 cut(s) 76, 195
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 35, 106
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 2 cut(s) 16, 146
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 10, 26, 172
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 40, 154
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 200
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 35, 106
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 85, 168
LpnPI CCDG 6 cut(s) 55, 108, 135, 150, 194, 221
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 87, 170
MboI GATC 2 cut(s) 85, 168
MboII GAAGA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 100, 168
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 3 cut(s) 43, 123, 209
MvaI CCWGG 2 cut(s) 123, 209
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 194, 200
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 31
NdeII GATC 2 cut(s) 85, 168
NlaIII CATG 2 cut(s) 35, 106
NlaIV GGNNCC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 77, 196
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 121, 207
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 2 cut(s) 121, 207
PspN4I GGNNCC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 2 cut(s) 76, 195
Sau3AI GATC 2 cut(s) 85, 168
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 43, 123, 209
SetI ASST 4 cut(s) 63, 111, 179, 213
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SsiI CCGC 5 cut(s) 36, 56, 75, 195, 205
StyD4I CCNGG 3 cut(s) 41, 121, 207
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 1 cut(s) 63
TauI GCSGC 2 cut(s) 78, 197
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 91, 102
TspRI CASTG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.