Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021347

Physical Location & Seq

Genomic Coordinates Forward (+)

60614504 .. 60616252

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTATGCATTATACTGTTATAATTTTCCTTTTTCTCTCAGGAAACTTGTGCTCCACCCAAAAGGAAATAAATGCCAGGGTGTGACAGATCACGCATCTCTCTACTTGGCAATTGTTGGAGCGGATTCACTTCCGACTGGTTGGGAAGTATATGTTAATTTCAGATTGTTTTTGCTTGATCAGACTAGCAGAGCCACATACTTGGTTCCACAAGGTTTGCATTGTTCTTGCATTGATCAACTAGTTATGATCTTGAAACGTGCAAACTGCAAATGCATGATGCTGATCGATAGAAGGGAAAAATGTTTTCATGGGATGATGCTTGAATCAGGATCTATCTGTGTGATTGATATTTGCTCTCTTTTCGATGGATGTATTGTTGGCGGGACCAGTGTGTTTGGAGCTGAGGTGTTTGTATGTAAAGAGAGAAGAACAGGCAACGGAGAGTGTCTATCAACAATTACTGACCTAGTACTTCAGAAGTACCATGAAATTGAGGTTCTATACAAATGGAAAAGCCGAAAGGGTGATGGAGTGGGCACACATCTTTCTCTTTATTTGGTTTTAGCTGATCCCACACATCTTCCTCCCGTTTCAAAGGTAAATGCTGAATTCGAGTTGAGCTTTTGGAATCGAAGTTTCTATAAACATCGTAACTGGTTCAGTGCCTGCAACCATGAAGCAGATTCGGCAAAGTTCAGTTCACTTAAAAATATCAGTCAGCCTGGATGTTTGCGTGATGATACTGGAGTTTTTGAAGCCAGAGTTACCGTCCGTGCAGTTGTTAATGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

265

Amino Acids

29.84

Weight (kDa)

8.35

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	15 - 63	3e-08	MATH domain
MATH_2	PF22486	175 - 256	1.1e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142941
rosa_laevigata	RLG00000019999
rosa_roxburghii	Rroxscaffold_2G00102210
rosa_samantha	Rh2BG439300 Rh2DG449300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	122
AciI	CCGC	2 cut(s)	122, 384
AclWI	GGATC	2 cut(s)	340, 566
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	474, 485
AgsI	TTSAA	4 cut(s)	256, 326, 597, 758
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	75, 724
AluBI	AGCT	3 cut(s)	404, 569, 624
AluI	AGCT	3 cut(s)	404, 569, 624
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	340, 566
AlwNI	CAGNNNCTG	1 cut(s)	669
ApoI	RAATTY	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	542
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
Bbv12I	GWGCWC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	362, 524
BciT130I	CCWGG	2 cut(s)	77, 726
BclI	TGATCA	2 cut(s)	178, 235
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	3 cut(s)	186, 242, 470
BmcAI	AGTACT	1 cut(s)	474
Bme1390I	CCNGG	2 cut(s)	77, 726
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	2 cut(s)	207, 388
BmrFI	CCNGG	2 cut(s)	77, 726
BmsI	GCATC	3 cut(s)	104, 270, 309
BpmI	CTGGAG	1 cut(s)	768
Bpu10I	CCTNAGC	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 393, 423
Bse1I	ACTGG	4 cut(s)	142, 390, 662, 751
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	77, 726
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	321, 377, 734
BseJI	GATNNNNATC	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	52, 396
BseNI	ACTGG	4 cut(s)	142, 390, 662, 751
BseSI	GKGCMC	1 cut(s)	542
BsgI	GTGCAG	1 cut(s)	798
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	54, 542
Bsp143I	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
BspACI	CCGC	2 cut(s)	122, 384
BspCNI	CTCAG	2 cut(s)	51, 397
BspDI	ATCGAT	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	207, 388
BspPI	GGATC	2 cut(s)	340, 566
BsrBI	CCGCTC	1 cut(s)	122
BsrI	ACTGG	4 cut(s)	142, 390, 662, 751
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
Bst2UI	CCWGG	2 cut(s)	77, 726
Bst4CI	ACNGT	2 cut(s)	17, 772
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	2 cut(s)	38, 405
BstF5I	GGATG	3 cut(s)	321, 377, 734
BstKTI	GATC	7 cut(s)	91, 181, 238, 252, 288, 335, 574
BstMBI	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	2 cut(s)	77, 726
BstSCI	CCNGG	2 cut(s)	75, 724
BstSLI	GKGCMC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	321, 377, 734
BtsIMutI	CAGTG	2 cut(s)	397, 670
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	473, 484
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	4 cut(s)	277, 311, 488, 677
CviJI	RGCY	7 cut(s)	194, 404, 519, 569, 624, 724, 761
CviKI_1	RGCY	7 cut(s)	194, 404, 519, 569, 624, 724, 761
CviQI	GTAC	2 cut(s)	473, 484
DdeI	CTNAG	2 cut(s)	38, 405
DpnI	GATC	7 cut(s)	90, 180, 237, 251, 287, 334, 573
DpnII	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	75, 724
EcoT22I	ATGCAT	2 cut(s)	10, 278
FaeI	CATG	4 cut(s)	280, 314, 491, 680
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	4 cut(s)	276, 310, 487, 676
FauI	CCCGC	1 cut(s)	377
FbaI	TGATCA	2 cut(s)	178, 235
FokI	GGATG	3 cut(s)	328, 384, 741
FspBI	CTAG	3 cut(s)	186, 242, 470
GsuI	CTGGAG	1 cut(s)	768
Hin1II	CATG	4 cut(s)	280, 314, 491, 680
HinfI	GANTC	4 cut(s)	125, 326, 631, 686
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	4 cut(s)	135, 164, 183, 480
Hpy188III	TCNNGA	3 cut(s)	40, 253, 330
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	17, 772
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	8 cut(s)	8, 220, 231, 263, 270, 276, 672, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	2 cut(s)	38, 405
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	4 cut(s)	280, 314, 491, 680
Ksp22I	TGATCA	2 cut(s)	178, 235
Kzo9I	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
LmnI	GCTCC	3 cut(s)	57, 119, 401
LweI	GCATC	3 cut(s)	104, 270, 309
MaeI	CTAG	3 cut(s)	186, 242, 470
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	3 cut(s)	82, 653, 766
MalI	GATC	7 cut(s)	90, 180, 237, 251, 287, 334, 573
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
MboII	GAAGA	2 cut(s)	441, 575
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	54, 542
MluCI	AATT	6 cut(s)	22, 111, 157, 459, 492, 611
MmeI	TCCRAC	2 cut(s)	97, 158
MnlI	CCTC	3 cut(s)	400, 490, 597
Mph1103I	ATGCAT	2 cut(s)	10, 278
MseI	TTAA	4 cut(s)	156, 708, 786, 796
MspR9I	CCNGG	2 cut(s)	77, 726
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	77, 726
MwoI	GCNNNNNNNGC	1 cut(s)	689
NdeII	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
NlaIII	CATG	4 cut(s)	280, 314, 491, 680
NlaIV	GGNNCC	2 cut(s)	207, 388
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	2 cut(s)	10, 278
PfeI	GAWTC	4 cut(s)	125, 326, 631, 686
PsiI	TTATAA	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	75, 724
PspGI	CCWGG	2 cut(s)	75, 724
PspN4I	GGNNCC	2 cut(s)	207, 388
PspPI	GGNCC	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	474, 485
RsaNI	GTAC	2 cut(s)	473, 484
SaqAI	TTAA	4 cut(s)	156, 708, 786, 796
Sau3AI	GATC	7 cut(s)	88, 178, 235, 249, 285, 332, 571
Sau96I	GGNCC	1 cut(s)	387
ScaI	AGTACT	1 cut(s)	474
ScrFI	CCNGG	2 cut(s)	77, 726
SduI	GDGCHC	2 cut(s)	54, 542
SetI	ASST	9 cut(s)	217, 262, 406, 411, 471, 501, 571, 603, 626
SfaNI	GCATC	3 cut(s)	104, 270, 309
SinI	GGWCC	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	6 cut(s)	22, 111, 157, 459, 492, 611
SsiI	CCGC	2 cut(s)	122, 384
SspMI	CTAG	3 cut(s)	186, 242, 470
StyD4I	CCNGG	2 cut(s)	75, 724
TaaI	ACNGT	2 cut(s)	17, 772
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	4 cut(s)	288, 366, 615, 634
TasI	AATT	6 cut(s)	22, 111, 157, 459, 492, 611
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	4 cut(s)	125, 326, 631, 686
Tru1I	TTAA	4 cut(s)	156, 708, 786, 796
Tru9I	TTAA	4 cut(s)	156, 708, 786, 796
TscAI	CASTG	2 cut(s)	397, 670
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	299, 504, 693
TspGWI	ACGGA	2 cut(s)	456, 764
TspRI	CASTG	2 cut(s)	397, 670
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	611
XspI	CTAG	3 cut(s)	186, 242, 470
ZrmI	AGTACT	1 cut(s)	474
Zsp2I	ATGCAT	2 cut(s)	10, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.