RLG00000019999

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0021347
Physical Location & Seq
Forward (+)
59849995 .. 59851576
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019999

Sequence Viewer

Length: 528 bp
ATGAGGGAAGAGCACCGTCATGAGACCGCTGGAGACTCGACTATTTTGGCTGTATGCAGCAAATCAAGCCATTTCGATGGCCCGATGAGGGAGAGTATGGATGTGGTGACGTCCTCCGAGAGCTTCAGCCAGTTCTGGAAACTTGTGCTCCACCCAAAAGGAAATAAATGCATGGGTGTGACAGATCACGTATCTCTCTACTTGGCAATTGTTGGAGCGGATTCACTTCCAACTGGTTGGGAAGTATATGTTAATTTCAGATTGTTTTTGCTTGATCAGACTAGAGCCACATACTTAGTTCTACAAGCTGATCCCACACGTCTTCCTCCCGTTTCAAAGGTATATGCTGAATTCAAGTTGAGCTTTTGGAATCGAAGTTTCTATAAACATCGTAACTGGTTCAGTGCCTGCAACCATGAAGAAGATTCCGCAAAGTTCAGTTCACTTAAAAATATCAGACAGCCTGGATGTTTGCTTGATGATACTAAAGCCATAGTTACTGTCCGTGCAGTTGTTAATGCTCTATAA

Protein Analysis

176

Amino Acids

19.89

Weight (kDa)

7.73

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 43 - 163 4.8e-12 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021347)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0142941
rosa_laevigata RLG00000019999
rosa_roxburghii Rroxscaffold_2G00102210
rosa_samantha Rh2BG439300 Rh2DG449300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 218
AciI CCGC 3 cut(s) 27, 218, 429
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 2 cut(s) 336, 355
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 3 cut(s) 123, 308, 363
AluI AGCT 3 cut(s) 123, 308, 363
Alw21I GWGCWC 2 cut(s) 15, 150
Alw26I GTCTC 2 cut(s) 17, 27
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 408
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 15, 150
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 465
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 17, 27
BfaI CTAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 465
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 130, 238, 401
BseBI CCWGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 106, 473
BseLI CCNNNNNNNGG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 130, 238, 401
BseXI GCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 2 cut(s) 15, 150
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 17, 27
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 15, 150
Bsp143I GATC 3 cut(s) 184, 274, 310
BspACI CCGC 3 cut(s) 27, 218, 429
BspANI GGCC 1 cut(s) 81
BspHI TCATGA 1 cut(s) 19
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 3
BspTNI GGTCTC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 218
BsrI ACTGG 3 cut(s) 130, 238, 401
BssMI GATC 3 cut(s) 184, 274, 310
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 17, 502
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 106, 473
BstKTI GATC 3 cut(s) 187, 277, 313
BstMAI GTCTC 2 cut(s) 17, 27
BstMBI GATC 3 cut(s) 184, 274, 310
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 314
BstXI CCANNNNNNTGG 2 cut(s) 77, 237
BsuRI GGCC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 106, 473
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 409
CaiI CAGNNNCTG 1 cut(s) 408
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 80
CviAII CATG 3 cut(s) 20, 172, 416
DdeI CTNAG 1 cut(s) 295
DpnI GATC 3 cut(s) 186, 276, 312
DpnII GATC 3 cut(s) 184, 274, 310
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 173
FaeI CATG 3 cut(s) 23, 175, 419
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 3 cut(s) 19, 171, 415
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 2 cut(s) 113, 480
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 3 cut(s) 23, 175, 419
HinfI GANTC 4 cut(s) 35, 221, 370, 425
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 4 cut(s) 118, 260, 279, 458
Hpy188III TCNNGA 2 cut(s) 20, 136
Hpy8I GTNNAC 1 cut(s) 443
HpyCH4III ACNGT 2 cut(s) 17, 502
HpyCH4IV ACGT 3 cut(s) 110, 189, 319
HpyCH4V TGCA 4 cut(s) 57, 171, 411, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 3 cut(s) 110, 189, 319
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 3 cut(s) 23, 175, 419
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 184, 274, 310
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 153, 215
LpnPI CCDG 8 cut(s) 15, 121, 143, 219, 382, 421, 450, 477
Lsp1109I GCAGC 1 cut(s) 69
MaeI CTAG 1 cut(s) 282
MaeII ACGT 3 cut(s) 110, 189, 319
MaeIII GTNAC 4 cut(s) 106, 178, 392, 496
MalI GATC 3 cut(s) 186, 276, 312
MbiI CCGCTC 1 cut(s) 218
MboI GATC 3 cut(s) 184, 274, 310
MboII GAAGA 4 cut(s) 20, 314, 431, 434
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 15, 150
MluCI AATT 3 cut(s) 207, 253, 350
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 193, 254
MnlI CCTC 3 cut(s) 81, 124, 336
Mph1103I ATGCAT 1 cut(s) 173
MseI TTAA 3 cut(s) 252, 447, 516
MslI CAYNNNNRTG 3 cut(s) 18, 75, 176
MspA1I CMGCKG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 465
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 3 cut(s) 184, 274, 310
NlaIII CATG 3 cut(s) 23, 175, 419
NmuCI GTSAC 2 cut(s) 106, 178
NsiI ATGCAT 1 cut(s) 173
PagI TCATGA 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 3
PfeI GAWTC 3 cut(s) 221, 370, 425
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspPI GGNCC 1 cut(s) 80
PstNI CAGNNNCTG 1 cut(s) 408
RseI CAYNNNNRTG 3 cut(s) 18, 75, 176
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 3 cut(s) 252, 447, 516
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 3 cut(s) 184, 274, 310
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 2 cut(s) 15, 150
SetI ASST 7 cut(s) 113, 125, 192, 310, 322, 342, 365
SmiMI CAYNNNNRTG 3 cut(s) 18, 75, 176
Sse9I AATT 3 cut(s) 207, 253, 350
SsiI CCGC 3 cut(s) 27, 218, 429
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 17, 502
TaiI ACGT 3 cut(s) 113, 192, 322
TaqI TCGA 3 cut(s) 38, 75, 373
TasI AATT 3 cut(s) 207, 253, 350
TfiI GAWTC 3 cut(s) 221, 370, 425
Tru1I TTAA 3 cut(s) 252, 447, 516
Tru9I TTAA 3 cut(s) 252, 447, 516
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 106, 178
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 2 cut(s) 106, 178
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 1 cut(s) 409
XapI RAATTY 1 cut(s) 350
XspI CTAG 1 cut(s) 282
ZraI GACGTC 1 cut(s) 111
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.