Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021347

Physical Location & Seq

Genomic Coordinates Forward (+)

62174794 .. 62175409

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG439300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATGTATTGTTGGCGGGACCAGTGTGTTTGGAGCTGAGCTGGAGGTCAAAATTGGAAATTGAGGTTCTATACAAATGGAAAAGCCGAAAGGGTGATGGAGTGGGCACACATCTTTCTCTTTATTTGGTTTTAGCTGATCCCACACATCTTCCTCCCGTTTCAAAGGTAAATGCTGAATTCGAGTTGAGCTTTTGGAATCGAAGTTTCTATAAACATCGTAACTGGTTCAGTGCCTGCAACCATGAAGCAGATTCGGCAAAGTTCAGTTCACTTAAAAATATCAGTCAGCCTGGATGTTTGCGTGATGATACTGGAGTTTTTGAAGCCAGAGTTACCGTCCGTGCAGTTGTTAATGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

8.49

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	31 - 112	1.4e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142941
rosa_laevigata	RLG00000019999
rosa_roxburghii	Rroxscaffold_2G00102210
rosa_samantha	Rh2BG439300 Rh2DG449300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	165, 326
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	37, 42, 137, 192
AluI	AGCT	4 cut(s)	37, 42, 137, 192
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	294
BlpI	GCTNAGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	64, 336
Bpu1102I	GCTNAGC	1 cut(s)	38
Bse1I	ACTGG	3 cut(s)	23, 230, 319
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	10, 302
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	23, 230, 319
BseSI	GKGCMC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	139
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	23, 230, 319
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	10, 302
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	10, 302
BtsIMutI	CAGTG	2 cut(s)	30, 238
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	20
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	7 cut(s)	37, 42, 87, 137, 192, 292, 329
CviKI_1	RGCY	7 cut(s)	37, 42, 87, 137, 192, 292, 329
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	248
FaiI	YATR	3 cut(s)	73, 213, 246
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	10
FokI	GGATG	2 cut(s)	17, 309
GsuI	CTGGAG	2 cut(s)	64, 336
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	2 cut(s)	199, 254
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	2 cut(s)	240, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	28, 36, 211, 250, 279, 300, 306, 343
MaeIII	GTNAC	2 cut(s)	221, 334
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	3 cut(s)	53, 60, 179
MnlI	CCTC	3 cut(s)	39, 58, 165
MseI	TTAA	3 cut(s)	276, 354, 364
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	199, 254
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	276, 354, 364
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	7 cut(s)	39, 44, 50, 69, 139, 171, 194
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	3 cut(s)	53, 60, 179
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	183, 202
TasI	AATT	3 cut(s)	53, 60, 179
TfiI	GAWTC	2 cut(s)	199, 254
Tru1I	TTAA	3 cut(s)	276, 354, 364
Tru9I	TTAA	3 cut(s)	276, 354, 364
TscAI	CASTG	2 cut(s)	30, 238
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	30, 238
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.