Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0021347

Physical Location & Seq

Genomic Coordinates Reverse (-)

24266124 .. 24267227

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGCTGGAGCGTTGTTTTGGTATTTTGGAAACTTGTGCTCCACCCAAAAGTAAATAAATGCAAGGGTGTGACAGATCACGTATCTCTCTACTTGGCAATTGTTGGAGCGGATTCACTTCCGACTGGTTGGGAAGTATATGTTAATTTCAGATTGTTTTTGCTTGATCAGACTAGAGCCACATACTTAGTTCTACAAGGATTTATCTCTGTGAATGATGTTTGCTCTCTTTTCGATGGATATATTGTTGGCGGGCCCAGTGTGTTTGGAGCTCAGGAAATTGAGGCTCTATCCAAATGGAAAAGCCGAAAAGGTGATGGAGTGGGCACACATCTTTCTCTTTATTTGGTTTTTGCTGATCCCACACATCTTCCTCCCGTTTCAAAGGTATATGCTGAATTCGAGTTGAGCTTTTGGAATCGAAGTTTCTATAAACATCGTAACTGGTTCAGTGCCTGCAACCATGAAGAAGATTCGGCAAAGTTCAGTTCACTTAAAAATATCAGACAGCCTGGATGTTTGCTTGATGGTACTGGCGTTTTTGAAGCCAGAGTTACTGTCCTTGCAGTTGTTAATGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

194

Amino Acids

21.74

Weight (kDa)

7.67

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	10 - 61	4.9e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142941
rosa_laevigata	RLG00000019999
rosa_roxburghii	Rroxscaffold_2G00102210
rosa_samantha	Rh2BG439300 Rh2DG449300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	2 cut(s)	110, 252
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	1 cut(s)	532
AgsI	TTSAA	2 cut(s)	384, 545
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	2 cut(s)	272, 411
AluI	AGCT	2 cut(s)	272, 411
Alw21I	GWGCWC	2 cut(s)	42, 274
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	456
AoxI	GGCC	1 cut(s)	254
ApaI	GGGCCC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	254, 255
AsuHPI	GGTGA	1 cut(s)	326
BaeGI	GKGCMC	2 cut(s)	258, 329
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanII	GRGCYC	2 cut(s)	258, 274
Bbv12I	GWGCWC	2 cut(s)	42, 274
BccI	CCATC	3 cut(s)	230, 311, 521
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	254, 255
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse1I	ACTGG	4 cut(s)	130, 258, 449, 538
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	4 cut(s)	130, 258, 449, 538
BseSI	GKGCMC	2 cut(s)	258, 329
BshFI	GGCC	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	42, 274
BsnI	GGCC	1 cut(s)	256
Bsp120I	GGGCCC	1 cut(s)	254
Bsp1286I	GDGCHC	4 cut(s)	42, 258, 274, 329
Bsp143I	GATC	3 cut(s)	76, 166, 358
BspACI	CCGC	2 cut(s)	110, 252
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	110
BsrI	ACTGG	4 cut(s)	130, 258, 449, 538
BssMI	GATC	3 cut(s)	76, 166, 358
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	559
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	254, 457
BstDEI	CTNAG	2 cut(s)	187, 273
BstF5I	GGATG	1 cut(s)	521
BstKTI	GATC	3 cut(s)	79, 169, 361
BstMBI	GATC	3 cut(s)	76, 166, 358
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSLI	GKGCMC	2 cut(s)	258, 329
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	265, 457
Cac8I	GCNNGC	2 cut(s)	254, 457
CaiI	CAGNNNCTG	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	254, 255
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	8 cut(s)	179, 256, 272, 287, 306, 411, 511, 548
CviKI_1	RGCY	8 cut(s)	179, 256, 272, 287, 306, 411, 511, 548
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	2 cut(s)	187, 273
DpnI	GATC	3 cut(s)	78, 168, 360
DpnII	GATC	3 cut(s)	76, 166, 358
Ecl136II	GAGCTC	1 cut(s)	272
Eco24I	GRGCYC	2 cut(s)	258, 274
Eco53kI	GAGCTC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	511
EcoT38I	GRGCYC	2 cut(s)	258, 274
FaeI	CATG	1 cut(s)	467
FaiI	YATR	8 cut(s)	139, 141, 184, 243, 391, 393, 432, 465
FatI	CATG	1 cut(s)	463
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	166
FokI	GGATG	1 cut(s)	528
FriOI	GRGCYC	2 cut(s)	258, 274
FspBI	CTAG	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	467
HinfI	GANTC	3 cut(s)	113, 418, 473
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	4 cut(s)	123, 152, 171, 506
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	63, 459, 566
HpyF3I	CTNAG	2 cut(s)	187, 273
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	76, 166, 358
LmnI	GCTCC	4 cut(s)	9, 45, 107, 269
LpnPI	CCDG	9 cut(s)	111, 260, 271, 430, 469, 498, 519, 525, 562
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	70, 440, 553
MalI	GATC	3 cut(s)	78, 168, 360
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	3 cut(s)	76, 166, 358
MboII	GAAGA	3 cut(s)	362, 479, 482
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	4 cut(s)	42, 258, 274, 329
MluCI	AATT	4 cut(s)	99, 145, 279, 398
MmeI	TCCRAC	2 cut(s)	85, 146
MnlI	CCTC	2 cut(s)	277, 384
MseI	TTAA	4 cut(s)	144, 495, 573, 583
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	513
NdeII	GATC	3 cut(s)	76, 166, 358
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	113, 418, 473
Ppu21I	YACGTR	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	256
PspOMI	GGGCCC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	254, 255
PstNI	CAGNNNCTG	1 cut(s)	456
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	144, 495, 573, 583
Sau3AI	GATC	3 cut(s)	76, 166, 358
Sau96I	GGNCC	2 cut(s)	254, 255
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	4 cut(s)	42, 258, 274, 329
SetI	ASST	5 cut(s)	84, 274, 316, 390, 413
Sse9I	AATT	4 cut(s)	99, 145, 279, 398
SsiI	CCGC	2 cut(s)	110, 252
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	234, 402, 421
TasI	AATT	4 cut(s)	99, 145, 279, 398
TfiI	GAWTC	3 cut(s)	113, 418, 473
Tru1I	TTAA	4 cut(s)	144, 495, 573, 583
Tru9I	TTAA	4 cut(s)	144, 495, 573, 583
TscAI	CASTG	2 cut(s)	265, 457
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	265, 457
XapI	RAATTY	1 cut(s)	398
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.