Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019371

Physical Location & Seq

Genomic Coordinates Reverse (-)

62266997 .. 62267350

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACCCACCTTCTTTTCTTCAAAGGATCCGAGTATTCGAAAGAAATAGGGCTTACTCTAATGGGGGTCATGATCATATGTTGCACTCTCCCATTGACGCTAATATATTTCCCGCAATGGGGTGGAATGTTGAGTGCTCCATCATCTATAAACACCGGTACTGAAGAGGAGTACTACATGTCCGAATGGACTTCAGTGGAGAAGGAGAAAGGTTTTCGTCGCGCAAGTGTGAAATTTGCTGAGAACAGCAGAAGCGAAAGGGGAAAATCGGACTCTTTAACCAGGACCTCTGATGATATTCCACCAACAGGCAACAGTACATGTTTATCTAGCTTGTACTACATCAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

5.37

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019371)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144651
rosa_laevigata	RLG00000016485
rosa_samantha	Rh2AG440400 Rh2BG450800 Rh2CG427600 Rh2DG460800 Rh4AG321700 Rh4DG325800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	21, 34
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	177, 183
AfaI	GTAC	4 cut(s)	160, 173, 319, 338
AfiI	CCNNNNNNNGG	3 cut(s)	118, 119, 308
AflIII	ACRYGT	2 cut(s)	177, 320
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	2 cut(s)	21, 34
ApoI	RAATTY	1 cut(s)	233
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	285
AsuII	TTCGAA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	1 cut(s)	330
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 119, 308
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	118, 119, 308
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	222
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	118, 119, 308
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	26, 72
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	21, 34
BspT104I	TTCGAA	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	2 cut(s)	26, 72
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	317, 350
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	29, 75
BstMBI	GATC	2 cut(s)	26, 72
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	2 cut(s)	181, 324
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	201
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	4 cut(s)	159, 172, 318, 337
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	3 cut(s)	70, 178, 321
CviJI	RGCY	2 cut(s)	52, 333
CviKI_1	RGCY	2 cut(s)	52, 333
CviQI	GTAC	4 cut(s)	159, 172, 318, 337
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	28, 74
DpnII	GATC	2 cut(s)	26, 72
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	177, 183
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	73, 181, 324
FaiI	YATR	7 cut(s)	71, 77, 79, 106, 149, 179, 322
FatI	CATG	3 cut(s)	69, 177, 320
FauI	CCCGC	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	72
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	223
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	73, 181, 324
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	4 cut(s)	31, 184, 271, 292
Hpy188III	TCNNGA	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	20, 196
HpyCH4III	ACNGT	2 cut(s)	317, 350
HpyCH4V	TGCA	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	73, 181, 324
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	26, 72
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	169, 268, 294, 295
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	28, 74
MboI	GATC	2 cut(s)	26, 72
MboII	GAAGA	2 cut(s)	10, 176
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	2 cut(s)	160, 298
MseI	TTAA	1 cut(s)	278
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	2 cut(s)	26, 72
NlaIII	CATG	3 cut(s)	73, 181, 324
NlaIV	GGNNCC	1 cut(s)	28
NspI	RCATGY	2 cut(s)	181, 324
NspV	TTCGAA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	69
PciI	ACATGT	2 cut(s)	177, 320
PinAI	ACCGGT	1 cut(s)	155
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	285
PscI	ACATGT	2 cut(s)	177, 320
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	285
PspPPI	RGGWCCY	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	4 cut(s)	160, 173, 319, 338
RsaNI	GTAC	4 cut(s)	159, 172, 318, 337
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	26, 72
Sau96I	GGNCC	1 cut(s)	285
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	4 cut(s)	12, 214, 290, 335
SfuI	TTCGAA	1 cut(s)	38
SinI	GGWCC	1 cut(s)	285
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	317, 350
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	233
TatI	WGTACW	3 cut(s)	171, 317, 336
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	201
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	181, 324
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.