RLG00000016485

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019371
Physical Location & Seq
Reverse (-)
7018978 .. 7020498
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016485

Sequence Viewer

Length: 1038 bp
ATGGGAGAGACGGGGAAGCGGTATCGTTCTCAGAGGGACCGAGATTATGATGGCGGGAACAAGAACCAGAAGAGGCGGATGAATGACAGAGAAGAAAGGGGAGGCGGCGATGAGGTTGTTGTATACAGGATTCTATGCCCTGTTGGGGTTATTGGAAGCGTGATTGGGAAGAGTGGGAAAGTGATAAATTCGATTAGGCAGGATGGTAGAGCTAAGATAAAAGTTGTAACCATTTATAGCTATGTTAGGGACAAGGAGGAGGTTGATGTTGATGATGAGTTCAGTAGTGATAGGGAGCCCTTGTGTGCTGCACAGGATGCTCTATTTAAAGTACATTCAGCTATTTCGAATGTGCTGGCTGCTGCTGGAGCTTCTGATAAGAGAAGGAGAGATAAGGAAGAGTGTCAGATTCTTGTCCCGGCTAGCCAGTGTGCTAATGTGATAGGTAAGGCTGGGTCGACGATAAAGAAAGTGAGGAGCAGAACGAGGACGAACATTAAGGTCATTGTGAAAGATGCCTCTGAACCAACACATTCCTGTGCAATGGACTTTGACAACTTTGTTACGTTTACATATGCAATCCATTTGTGCATCATTAGGCTTGATTATAATTTTAATCTTGTTTTCAGGTCACTAGGTGTCATCTCTGGTATGATGGGGGGTGGTGGAAGCTTGGGTGCAGTTATGACCCAACTCATTTTCTTCAAAGGATCCGAGCATTCGAAAGAAACATGGCTTACTCTAATGGGGGTCATGATCATATGTTGCACTCTCCCATTGACGCTAATGTATTTCCCGCAATGGGGTGGAATGTTGAGTGGTCCATCGTCTATAAACGCCGGTACTGAAGAGGAGTACTACATGTCTGAATGGACTTCAGTGGAGAAGGAGAAAGGTTTTCATCGCGCAAGTGTGAAATTTGCTGAGAACAGCAGAAGCGAAAGGGGAAAATCGGACTCTTTAACCAGGACCTCTGATGATATTCCACCAACAGGCAACAGTACATGTTTATCTAGCTTGTACTACATCAACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

346

Amino Acids

38.25

Weight (kDa)

8.58

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 42 - 76 1.3e-07 KH domain
KH_1 PF00013 135 - 175 3.1e-09 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019371)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0144651
rosa_laevigata RLG00000016485
rosa_samantha Rh2AG440400 Rh2BG450800 Rh2CG427600 Rh2DG460800 Rh4AG321700 Rh4DG325800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AccI GTMKAC 2 cut(s) 123, 458
AccII CGCG 1 cut(s) 906
AciI CCGC 5 cut(s) 19, 54, 76, 105, 797
AclWI GGATC 2 cut(s) 705, 718
AcsI RAATTY 2 cut(s) 187, 917
AcuI CTGAAG 2 cut(s) 861, 867
AdeI CACNNNGTG 1 cut(s) 638
AfaI GTAC 5 cut(s) 333, 844, 857, 1003, 1022
AfiI CCNNNNNNNGG 4 cut(s) 145, 802, 803, 992
AflIII ACRYGT 2 cut(s) 861, 1004
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 965
AluBI AGCT 6 cut(s) 212, 240, 341, 371, 672, 1017
AluI AGCT 6 cut(s) 212, 240, 341, 371, 672, 1017
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 705, 718
ApeKI GCWGC 3 cut(s) 308, 359, 362
ApoI RAATTY 2 cut(s) 187, 917
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 3 cut(s) 37, 821, 969
AsuC2I CCSGG 1 cut(s) 419
AsuII TTCGAA 2 cut(s) 347, 722
AsuNHI GCTAGC 1 cut(s) 422
AvaII GGWCC 3 cut(s) 37, 821, 969
BamHI GGATCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 295, 346, 349
BccI CCATC 4 cut(s) 44, 197, 649, 832
BciT130I CCWGG 1 cut(s) 967
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 3 cut(s) 423, 635, 1014
BisI GCNGC 4 cut(s) 106, 309, 360, 363
BlsI GCNGC 4 cut(s) 107, 310, 361, 364
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 2 cut(s) 419, 967
Bme18I GGWCC 3 cut(s) 37, 821, 969
BmgT120I GGNCC 3 cut(s) 37, 821, 969
BmiI GGNNCC 3 cut(s) 38, 297, 712
BmrFI CCNGG 2 cut(s) 419, 967
BmsI GCATC 3 cut(s) 307, 505, 600
BmtI GCTAGC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 387
Bpu14I TTCGAA 2 cut(s) 347, 722
BpuMI CCSGG 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 802, 803, 992
Bse118I RCCGGY 1 cut(s) 839
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 2 cut(s) 549, 806
BseBI CCWGG 1 cut(s) 967
BseGI GGATG 3 cut(s) 84, 208, 322
BseLI CCNNNNNNNGG 4 cut(s) 145, 802, 803, 992
BseMI GCAATG 2 cut(s) 549, 806
BseMII CTCAG 2 cut(s) 44, 915
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 3 cut(s) 272, 490, 866
BseXI GCAGC 3 cut(s) 295, 346, 349
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 2 cut(s) 294, 699
Bsh1236I CGCG 1 cut(s) 906
BsiSI CCGG 2 cut(s) 419, 840
BslFI GGGAC 3 cut(s) 50, 263, 401
BslI CCNNNNNNNGG 4 cut(s) 145, 802, 803, 992
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 3 cut(s) 50, 263, 401
BsmI GAATGC 1 cut(s) 718
Bsp119I TTCGAA 2 cut(s) 347, 722
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 710, 756
BspACI CCGC 5 cut(s) 19, 54, 76, 105, 797
BspCNI CTCAG 2 cut(s) 43, 916
BspFNI CGCG 1 cut(s) 906
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 3 cut(s) 38, 297, 712
BspOI GCTAGC 1 cut(s) 426
BspPI GGATC 2 cut(s) 705, 718
BspT104I TTCGAA 2 cut(s) 347, 722
BsrDI GCAATG 2 cut(s) 549, 806
BsrFI RCCGGY 1 cut(s) 839
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 839
BssMI GATC 2 cut(s) 710, 756
BssNAI GTATAC 1 cut(s) 124
Bst1107I GTATAC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 967
Bst4CI ACNGT 2 cut(s) 1001, 1034
Bst6I CTCTTC 4 cut(s) 65, 164, 393, 843
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBI TTCGAA 2 cut(s) 347, 722
BstC8I GCNNGC 2 cut(s) 357, 424
BstDEI CTNAG 3 cut(s) 30, 213, 924
BstF5I GGATG 3 cut(s) 84, 208, 322
BstFNI CGCG 1 cut(s) 906
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 2 cut(s) 713, 759
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 710, 756
BstMWI GCNNNNNNNGC 2 cut(s) 317, 368
BstNI CCWGG 1 cut(s) 967
BstNSI RCATGY 2 cut(s) 865, 1008
BstSCI CCNGG 2 cut(s) 417, 965
BstUI CGCG 1 cut(s) 906
BstV1I GCAGC 3 cut(s) 295, 346, 349
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BstZ17I GTATAC 1 cut(s) 124
BtgZI GCGATG 2 cut(s) 123, 887
BtsCI GGATG 3 cut(s) 84, 208, 322
BtsIMutI CAGTG 2 cut(s) 434, 885
Cac8I GCNNGC 2 cut(s) 357, 424
CciI TCATGA 1 cut(s) 753
CfoI GCGC 1 cut(s) 908
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 3 cut(s) 37, 821, 969
CseI GACGC 1 cut(s) 790
Csp6I GTAC 5 cut(s) 332, 843, 856, 1002, 1021
CviAII CATG 4 cut(s) 732, 754, 862, 1005
CviQI GTAC 5 cut(s) 332, 843, 856, 1002, 1021
DdeI CTNAG 3 cut(s) 30, 213, 924
DpnI GATC 2 cut(s) 712, 758
DpnII GATC 2 cut(s) 710, 756
DraI TTTAAA 1 cut(s) 328
DraIII CACNNNGTG 1 cut(s) 638
Eam1104I CTCTTC 4 cut(s) 65, 164, 393, 843
EarI CTCTTC 4 cut(s) 65, 164, 393, 843
EciI GGCGGA 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 37, 821, 969
Eco57I CTGAAG 2 cut(s) 861, 867
EcoO109I RGGNCCY 1 cut(s) 969
EcoRII CCWGG 1 cut(s) 965
EcoT38I GRGCYC 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 735, 757, 865, 1008
FaqI GGGAC 3 cut(s) 50, 263, 401
FatI CATG 4 cut(s) 731, 753, 861, 1004
FauI CCCGC 2 cut(s) 47, 804
FauNDI CATATG 2 cut(s) 574, 761
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 2 cut(s) 123, 458
Fnu4HI GCNGC 4 cut(s) 106, 309, 360, 363
FokI GGATG 3 cut(s) 91, 215, 329
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 106, 309, 360, 363
FspBI CTAG 3 cut(s) 423, 635, 1014
GlaI GCGC 1 cut(s) 907
GluI GCNGC 4 cut(s) 106, 309, 360, 363
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 387
HapII CCGG 2 cut(s) 419, 840
HgaI GACGC 1 cut(s) 790
HhaI GCGC 1 cut(s) 908
Hin1II CATG 4 cut(s) 735, 757, 865, 1008
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 3 cut(s) 130, 409, 956
HpaII CCGG 2 cut(s) 419, 840
Hpy166II GTNNAC 3 cut(s) 124, 459, 570
Hpy188I TCNGA 8 cut(s) 33, 376, 408, 523, 715, 868, 955, 976
Hpy188III TCNNGA 1 cut(s) 754
Hpy8I GTNNAC 3 cut(s) 124, 459, 570
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 2 cut(s) 378, 880
HpyCH4III ACNGT 2 cut(s) 1001, 1034
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 6 cut(s) 311, 542, 578, 591, 680, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 368
HpyF3I CTNAG 3 cut(s) 30, 213, 924
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 4 cut(s) 735, 757, 865, 1008
HspAI GCGC 1 cut(s) 906
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 2 cut(s) 710, 756
LmnI GCTCC 3 cut(s) 295, 368, 477
Lsp1109I GCAGC 3 cut(s) 295, 346, 349
LweI GCATC 3 cut(s) 307, 505, 600
MaeI CTAG 3 cut(s) 423, 635, 1014
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 3 cut(s) 226, 562, 630
MalI GATC 2 cut(s) 712, 758
MboI GATC 2 cut(s) 710, 756
MboII GAAGA 6 cut(s) 82, 104, 181, 410, 694, 860
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 3 cut(s) 187, 610, 917
MlyI GAGTC 1 cut(s) 950
MseI TTAA 5 cut(s) 327, 498, 615, 962, 1036
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 2 cut(s) 419, 840
MspR9I CCNGG 2 cut(s) 419, 967
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 1 cut(s) 967
MvnI CGCG 1 cut(s) 906
MwoI GCNNNNNNNGC 2 cut(s) 317, 368
NciI CCSGG 1 cut(s) 419
NdeI CATATG 2 cut(s) 574, 761
NdeII GATC 2 cut(s) 710, 756
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 4 cut(s) 735, 757, 865, 1008
NlaIV GGNNCC 3 cut(s) 38, 297, 712
NmuCI GTSAC 1 cut(s) 630
NspI RCATGY 2 cut(s) 865, 1008
NspV TTCGAA 2 cut(s) 347, 722
PagI TCATGA 1 cut(s) 753
PciI ACATGT 2 cut(s) 861, 1004
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 2 cut(s) 130, 409
PkrI GCNGC 4 cut(s) 107, 310, 361, 364
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
PpuMI RGGWCCY 1 cut(s) 969
PscI ACATGT 2 cut(s) 861, 1004
PsiI TTATAA 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 965
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 1 cut(s) 965
PspN4I GGNNCC 3 cut(s) 38, 297, 712
PspPI GGNCC 3 cut(s) 37, 821, 969
PspPPI RGGWCCY 1 cut(s) 969
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 5 cut(s) 333, 844, 857, 1003, 1022
RsaNI GTAC 5 cut(s) 332, 843, 856, 1002, 1021
RseI CAYNNNNRTG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 457
SaqAI TTAA 5 cut(s) 327, 498, 615, 962, 1036
SatI GCNGC 4 cut(s) 106, 309, 360, 363
Sau3AI GATC 2 cut(s) 710, 756
Sau96I GGNCC 3 cut(s) 37, 821, 969
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 2 cut(s) 419, 967
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 3 cut(s) 307, 505, 600
SfuI TTCGAA 2 cut(s) 347, 722
SinI GGWCC 3 cut(s) 37, 821, 969
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 3 cut(s) 187, 610, 917
SsiI CCGC 5 cut(s) 19, 54, 76, 105, 797
SspMI CTAG 3 cut(s) 423, 635, 1014
StyD4I CCNGG 2 cut(s) 417, 965
TaaI ACNGT 2 cut(s) 1001, 1034
TaiI ACGT 1 cut(s) 569
TaqI TCGA 4 cut(s) 191, 347, 458, 722
TaqII GACCGA 1 cut(s) 54
TasI AATT 3 cut(s) 187, 610, 917
TatI WGTACW 4 cut(s) 331, 855, 1001, 1020
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 130, 409
Tru1I TTAA 5 cut(s) 327, 498, 615, 962, 1036
Tru9I TTAA 5 cut(s) 327, 498, 615, 962, 1036
TscAI CASTG 2 cut(s) 434, 885
TseFI GTSAC 1 cut(s) 630
TseI GCWGC 3 cut(s) 308, 359, 362
Tsp45I GTSAC 1 cut(s) 630
TspDTI ATGAA 2 cut(s) 95, 890
TspRI CASTG 2 cut(s) 434, 885
VpaK11BI GGWCC 3 cut(s) 37, 821, 969
XapI RAATTY 2 cut(s) 187, 917
XceI RCATGY 2 cut(s) 865, 1008
XmiI GTMKAC 2 cut(s) 123, 458
XspI CTAG 3 cut(s) 423, 635, 1014
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.