Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019371

Physical Location & Seq

Genomic Coordinates Reverse (-)

66557987 .. 66559568

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG460800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATAGCGGCGACTTTCGGGTTGGCCAATATTGTTTCAAGACCGACAGGAGGGGTTTTATCGGATTTGATGGCGAGGAGGTTTGGGATGAGGGGGAGGCTGTGGACTTTGTGGGTGGTGCAAACTTTGGAGGGTGTTCTGGGGTGGTGGAAGCTTGGGTGCAGTTATGACCCAACTTATTTTCTTCAAAGGATCCGAGTATTCGAAAGAAATAGGGCTTACTCTAAGGGGGTCATGATCATATGTTGCACTCTCCCATTGACGCTAATATATTTCCCGCAATGGGGTGGAATGTTGAGTGCTCCATCATCTATAAACACCGGTACTGAAGAGGAGTACTACATGTCCGAATGGACTTCAGTGGAGAAGGAGAAAGGTTTTCATCGCGCAAGTGTGAAATTTGCTGAGAACAGCAGAAGCGAGAGGGGAAAATCGGACTCTTTAACCAGGACCTCTGATGATATTCCACCAACAGGCAACAGTACATGTTTATCTAGCTTGTACTACATCAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

172

Amino Acids

19.45

Weight (kDa)

8.85

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019371)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144651
rosa_laevigata	RLG00000016485
rosa_samantha	Rh2AG440400 Rh2BG450800 Rh2CG427600 Rh2DG460800 Rh4AG321700 Rh4DG325800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	8, 278
AclWI	GGATC	2 cut(s)	187, 200
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	2 cut(s)	342, 348
AfaI	GTAC	4 cut(s)	325, 338, 484, 503
AfiI	CCNNNNNNNGG	4 cut(s)	50, 283, 284, 473
AflIII	ACRYGT	2 cut(s)	342, 485
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	39, 188
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	2 cut(s)	154, 498
AluI	AGCT	2 cut(s)	154, 498
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	187, 200
AoxI	GGCC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	398
AsiGI	ACCGGT	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	450
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	304
BccI	CCATC	2 cut(s)	64, 313
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	1 cut(s)	237
BfaI	CTAG	1 cut(s)	495
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	448
Bpu14I	TTCGAA	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 283, 284, 473
Bse118I	RCCGGY	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	50, 283, 284, 473
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	91, 347
BsgI	GTGCAG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	4 cut(s)	50, 283, 284, 473
BsnI	GGCC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	192, 237
BspACI	CCGC	2 cut(s)	8, 278
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	187, 200
BspT104I	TTCGAA	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssMI	GATC	2 cut(s)	192, 237
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	482, 515
Bst6I	CTCTTC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	225, 405
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	2 cut(s)	195, 240
BstMBI	GATC	2 cut(s)	192, 237
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	2 cut(s)	346, 489
BstSCI	CCNGG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	366
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	450
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	4 cut(s)	324, 337, 483, 502
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	3 cut(s)	235, 343, 486
CviJI	RGCY	5 cut(s)	26, 100, 154, 218, 498
CviKI_1	RGCY	5 cut(s)	26, 100, 154, 218, 498
CviQI	GTAC	4 cut(s)	324, 337, 483, 502
DdeI	CTNAG	2 cut(s)	225, 405
DpnI	GATC	2 cut(s)	194, 239
DpnII	GATC	2 cut(s)	192, 237
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	2 cut(s)	342, 348
EcoO109I	RGGNCCY	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	238, 346, 489
FaiI	YATR	8 cut(s)	168, 236, 242, 244, 271, 314, 344, 487
FatI	CATG	3 cut(s)	234, 342, 485
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	238, 346, 489
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	5 cut(s)	64, 197, 349, 436, 457
Hpy188III	TCNNGA	2 cut(s)	39, 235
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	482, 515
HpyCH4V	TGCA	3 cut(s)	121, 162, 249
HpyF3I	CTNAG	2 cut(s)	225, 405
Hsp92II	CATG	3 cut(s)	238, 346, 489
HspAI	GCGC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	192, 237
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	6 cut(s)	33, 125, 334, 433, 459, 460
MaeI	CTAG	1 cut(s)	495
MalI	GATC	2 cut(s)	194, 239
MboI	GATC	2 cut(s)	192, 237
MboII	GAAGA	2 cut(s)	176, 341
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	9 cut(s)	44, 69, 72, 84, 90, 124, 325, 417, 463
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	26
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	2 cut(s)	192, 237
NlaIII	CATG	3 cut(s)	238, 346, 489
NlaIV	GGNNCC	1 cut(s)	194
NspI	RCATGY	2 cut(s)	346, 489
NspV	TTCGAA	1 cut(s)	204
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	2 cut(s)	342, 485
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	450
PscI	ACATGT	2 cut(s)	342, 485
Psp5II	RGGWCCY	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	450
PspPPI	RGGWCCY	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	4 cut(s)	325, 338, 484, 503
RsaNI	GTAC	4 cut(s)	324, 337, 483, 502
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	192, 237
Sau96I	GGNCC	1 cut(s)	450
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	5 cut(s)	83, 156, 379, 455, 500
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	1 cut(s)	450
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	2 cut(s)	8, 278
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	482, 515
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	398
TatI	WGTACW	3 cut(s)	336, 482, 501
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	2 cut(s)	346, 489
XspI	CTAG	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.