Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019371

Physical Location & Seq

Genomic Coordinates Reverse (-)

65142446 .. 65142832

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG440400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATAGGGGGTGGTGGTAGCTTGGGTGCAGTTATGACCCAACATATTTTCTTCAAAGGATCCGAGTATTCGAAAGAAATAGGGCTTACTCTAATGGGGGTCATCATCATATGTTGCACTCTCCCATTGACGCTAATATATTTCCCGCAATGGGGTGGAATGTTGAGTGCTCCATCATCTATAAACACCGGTACTGAAGAGGAGTACTACATGTCCGAATGGACTTCAGTGGAGAAGGAGAAAGGCTTTCATCGCGCAAGAGTGAAATTTGCTAAGAACAACAGAAGCGAAAGGGGAAAATCGGACTCTTTAACCAGGACCTCTGATGATATTCCACCAACAGGCAACAGTACATGTTTATCTAGCTTGTACTACATAAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

128

Amino Acids

14.11

Weight (kDa)

6.71

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019371)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144651
rosa_laevigata	RLG00000016485
rosa_samantha	Rh2AG440400 Rh2BG450800 Rh2CG427600 Rh2DG460800 Rh4AG321700 Rh4DG325800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	2 cut(s)	54, 67
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	2 cut(s)	210, 216
AfaI	GTAC	4 cut(s)	193, 206, 352, 371
AfiI	CCNNNNNNNGG	3 cut(s)	151, 152, 341
AflIII	ACRYGT	2 cut(s)	210, 353
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	21, 366
AluI	AGCT	2 cut(s)	21, 366
Alw21I	GWGCWC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	54, 67
ApoI	RAATTY	1 cut(s)	266
AsiGI	ACCGGT	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	318
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 152, 341
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	3 cut(s)	151, 152, 341
BseMI	GCAATG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	151, 152, 341
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	54, 67
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	350, 383
Bst6I	CTCTTC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	2 cut(s)	214, 357
BstSCI	CCNGG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	234
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	318
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	4 cut(s)	192, 205, 351, 370
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	211, 354
CviJI	RGCY	4 cut(s)	21, 85, 246, 366
CviKI_1	RGCY	4 cut(s)	21, 85, 246, 366
CviQI	GTAC	4 cut(s)	192, 205, 351, 370
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	210, 216
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	314
FaeI	CATG	2 cut(s)	214, 357
FaiI	YATR	9 cut(s)	35, 45, 110, 112, 139, 182, 212, 355, 377
FatI	CATG	2 cut(s)	210, 353
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	110
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	256
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	214, 357
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	189
Hpy188I	TCNGA	4 cut(s)	64, 217, 304, 325
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	350, 383
HpyCH4V	TGCA	2 cut(s)	29, 117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	214, 357
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	202, 301, 327, 328
MaeI	CTAG	1 cut(s)	363
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	43, 209
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	2 cut(s)	193, 331
MseI	TTAA	1 cut(s)	311
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	2 cut(s)	214, 357
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	2 cut(s)	214, 357
NspV	TTCGAA	1 cut(s)	71
PciI	ACATGT	2 cut(s)	210, 353
PinAI	ACCGGT	1 cut(s)	188
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	318
PscI	ACATGT	2 cut(s)	210, 353
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	318
PspPPI	RGGWCCY	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	4 cut(s)	193, 206, 352, 371
RsaNI	GTAC	4 cut(s)	192, 205, 351, 370
SaqAI	TTAA	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	318
ScaI	AGTACT	1 cut(s)	206
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	3 cut(s)	23, 323, 368
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	318
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	350, 383
TaqI	TCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	266
TatI	WGTACW	3 cut(s)	204, 350, 369
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	2 cut(s)	214, 357
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.