RchiOBHm_Chr2g0146401

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0021081
Physical Location & Seq
Forward (+)
64063425 .. 64064690
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 747 bp
ATGCTTTCGTCGCGTCTAGAAAGTGATGCAACTTTATTACGAACTATTGTTGTTGATCGCTCAACAATTCTTATACAGAATGTGGGTTTGATAGTTGCCTCATTTATCATTGCCTTCATCTTGAACTGGAGAATCACATTAGTGGTCTTAGCCACGTATCCTTTGATCATTAGTGGTCACATCAGCGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCACAGCACATCTGAAAGCTAACATGCTAGCTGGGGAAGCTGTAAGTAACATCCGCACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCATCGACCTATATGCTCATGAGCTTGTTGAGCCTTCTAGACGTTCATTTACTCGTGGTCAGATTGCTGGCATATTCTATGGTGTATCTCTGTTCTTCATATTCTCATCCTATGGCCTGGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTTGCTACCTTTAAATCTGTCATGAAATCATTCTTTGTTTTGATTGTAACGGCATTAGCAATGGGTGAGACTTTAGCACTTGCCCCAGATCTTTTAAAAGGGAACCAAATGGTGGCATCAGTCTTTGATGTAACAGATCGTAGAACAGAAGTCCTAGGGGACATAGGAGAAGAGGTTACGAAAGTGGAAGGGGCAATTGAGTTAAGGGGTGTTCAATTTAGCTACCCATCGAGACCAGACGTAGTGCTTTTCAGGGACTTCAATTTGAAAGTTCGAACTTGA

Protein Analysis

248

Amino Acids

27.43

Weight (kDa)

6.85

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 2 - 173 1.8e-29 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22520
rosa_chinensis RchiOBHm_Chr2g0146401 RchiOBHm_Chr5g0040371
rosa_multiflora Rmu_sc0000147.1_g000027
rosa_samantha Rh7DG261000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 577
AccII CGCG 1 cut(s) 13
AciI CCGC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 577
AgsI TTSAA 4 cut(s) 124, 680, 727, 733
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 6 cut(s) 242, 254, 263, 334, 466, 687
AluI AGCT 6 cut(s) 242, 254, 263, 334, 466, 687
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 2 cut(s) 527, 691
AoxI GGCC 2 cut(s) 424, 429
ApeKI GCWGC 1 cut(s) 287
Asp700I GAANNNNTTC 2 cut(s) 194, 494
AspA2I CCTAGG 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 542
AsuII TTCGAA 1 cut(s) 739
AsuNHI GCTAGC 1 cut(s) 250
AvrII CCTAGG 1 cut(s) 619
BauI CACGAG 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 274
BccI CCATC 2 cut(s) 448, 700
BceAI ACGGC 1 cut(s) 531
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 428
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 527, 691
BfaI CTAG 4 cut(s) 17, 251, 348, 620
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 1 cut(s) 553
BisI GCNGC 1 cut(s) 288
BlnI CCTAGG 1 cut(s) 619
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 16, 590
BmtI GCTAGC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 739
BpuEI CTTGAG 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 1 cut(s) 577
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 2 cut(s) 108, 531
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 2 cut(s) 273, 416
BseLI CCNNNNNNNGG 1 cut(s) 577
BseMI GCAATG 2 cut(s) 108, 531
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 2 cut(s) 426, 431
BsiHKAI GWGCWC 1 cut(s) 227
BslFI GGGAC 2 cut(s) 638, 734
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 2 cut(s) 527, 691
BsmFI GGGAC 2 cut(s) 638, 734
BsnI GGCC 2 cut(s) 426, 431
Bso31I GGTCTC 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 55, 165, 553, 601
BspACI CCGC 1 cut(s) 277
BspANI GGCC 2 cut(s) 426, 431
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 3 cut(s) 198, 328, 486
BspLI GGNNCC 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 739
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 2 cut(s) 108, 531
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 4 cut(s) 55, 165, 553, 601
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 619
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 739
BstC8I GCNNGC 3 cut(s) 252, 379, 468
BstDEI CTNAG 2 cut(s) 148, 300
BstF5I GGATG 2 cut(s) 273, 416
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 4 cut(s) 58, 168, 556, 604
BstMAI GTCTC 2 cut(s) 527, 691
BstMBI GATC 4 cut(s) 55, 165, 553, 601
BstMWI GCNNNNNNNGC 5 cut(s) 10, 213, 222, 260, 340
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 426
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 2 cut(s) 426, 431
BtsCI GGATG 2 cut(s) 273, 416
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 3 cut(s) 252, 379, 468
CciI TCATGA 3 cut(s) 198, 328, 486
CseI GACGC 1 cut(s) 2
CviAII CATG 4 cut(s) 199, 247, 329, 487
DdeI CTNAG 2 cut(s) 148, 300
DpnI GATC 4 cut(s) 57, 167, 555, 603
DpnII GATC 4 cut(s) 55, 165, 553, 601
DraI TTTAAA 2 cut(s) 478, 561
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco130I CCWWGG 1 cut(s) 619
Eco31I GGTCTC 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 4 cut(s) 202, 250, 332, 490
FaqI GGGAC 2 cut(s) 638, 734
FatI CATG 4 cut(s) 198, 246, 328, 486
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 260, 403
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 4 cut(s) 17, 251, 348, 620
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 2 cut(s) 426, 431
HgaI GACGC 1 cut(s) 2
Hin1II CATG 4 cut(s) 202, 250, 332, 490
HinfI GANTC 1 cut(s) 132
HphI GGTGA 1 cut(s) 542
Hpy188I TCNGA 3 cut(s) 237, 301, 372
Hpy188III TCNNGA 7 cut(s) 17, 121, 199, 329, 348, 487, 696
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 124, 301, 354, 647
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 3 cut(s) 155, 352, 705
HpyCH4V TGCA 2 cut(s) 29, 290
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 213, 222, 260, 340
HpyF3I CTNAG 2 cut(s) 148, 300
HpySE526I ACGT 3 cut(s) 155, 352, 705
Hsp92II CATG 4 cut(s) 202, 250, 332, 490
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 55, 165, 553, 601
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 8 cut(s) 112, 240, 363, 413, 440, 564, 703, 714
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 2 cut(s) 16, 590
MaeI CTAG 4 cut(s) 17, 251, 348, 620
MaeII ACGT 3 cut(s) 155, 352, 705
MaeIII GTNAC 5 cut(s) 176, 269, 511, 595, 640
MalI GATC 4 cut(s) 57, 167, 555, 603
MboI GATC 4 cut(s) 55, 165, 553, 601
MboII GAAGA 2 cut(s) 397, 647
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 4 cut(s) 66, 660, 680, 727
MnlI CCTC 3 cut(s) 109, 295, 631
MroXI GAANNNNTTC 2 cut(s) 194, 494
MseI TTAA 3 cut(s) 477, 560, 668
MslI CAYNNNNRTG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 10, 213, 222, 260, 340
NdeII GATC 4 cut(s) 55, 165, 553, 601
NheI GCTAGC 1 cut(s) 250
NlaIII CATG 4 cut(s) 202, 250, 332, 490
NlaIV GGNNCC 1 cut(s) 569
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 250
NspV TTCGAA 1 cut(s) 739
OliI CACNNNNGTG 1 cut(s) 140
PagI TCATGA 3 cut(s) 198, 328, 486
PdmI GAANNNNTTC 2 cut(s) 194, 494
PfeI GAWTC 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 577
PkrI GCNGC 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 569
PsuI RGATCY 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 477, 560, 668
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 4 cut(s) 55, 165, 553, 601
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 16, 590
SfuI TTCGAA 1 cut(s) 739
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 4 cut(s) 66, 660, 680, 727
SsiI CCGC 1 cut(s) 277
SspMI CTAG 4 cut(s) 17, 251, 348, 620
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 3 cut(s) 158, 355, 708
TaqI TCGA 3 cut(s) 315, 695, 739
TasI AATT 4 cut(s) 66, 660, 680, 727
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 3 cut(s) 477, 560, 668
Tru9I TTAA 3 cut(s) 477, 560, 668
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 6 cut(s) 106, 187, 215, 345, 397, 503
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 577
XbaI TCTAGA 2 cut(s) 16, 347
XceI RCATGY 1 cut(s) 250
XmaJI CCTAGG 1 cut(s) 619
XmnI GAANNNNTTC 2 cut(s) 194, 494
XspI CTAG 4 cut(s) 17, 251, 348, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.