Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021081

Physical Location & Seq

Genomic Coordinates Reverse (-)

35060173 .. 35066553

Gene Structure 6381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAAAGATGTTTTCTGCAATTTTGAGGAATGAGATCGGATGGTTTGATGATACAAACAACACCAGTTCTATGCTTTCGTCGCGTCTAGAAAGTGATGCAACTTTATTACGAACTATTGTTGTTGATCGCTCAACAATTCTTATACAGAATGTGGGTTTGATAGTTGCCTCATTTATCATTGCCTTCATCTTGAACTTGAGCACAGCATATCTGAAAGCTAACATGCTAGTTGGGGAAGCTGTAAGTAACATCCGCACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCATCGACCTATATGCTCATGAGCTTGTTGAGCCTTCTAGACGTTCATTTACTCGTGGTCAGATTGCTGGCATATTCTATGGTGTATCTCAGTTCTTCATATTCTCATCCTATGGCCTGGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTTGCTACCTTTAAATCTGTCATGAAATCATTCTTTGTTTTGATTGTAACGGCATTAGCAATGGGTGAGACTTTAGCACTTGCTCCAGATCTTTTAAAAGGGAACCAAATGGTGGCATCAGTCTTTGATGTAACAGATCGTAGAACAGAAGTCCTAGGGGACATAGGAGAAGAGGTTACGAAAGTGGAAGGGGCAATTGAGTTAAGGGGCGTTCAATTTAGCTACCCATCGAGACCAGACGTAGTGCTTTTCAGGGACTTCAATTTGAAAGTTCGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

241

Amino Acids

26.83

Weight (kDa)

5.2

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 68	6.3e-08	ABC transporter transmembrane region
ABC_membrane	PF00664	69 - 166	5.4e-18	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021081)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22520
rosa_chinensis	RchiOBHm_Chr2g0146401 RchiOBHm_Chr5g0040371
rosa_multiflora	Rmu_sc0000147.1_g000027
rosa_samantha	Rh7DG261000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	196, 659, 706, 712
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	5 cut(s)	221, 242, 313, 445, 666
AluI	AGCT	5 cut(s)	221, 242, 313, 445, 666
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	506, 670
AoxI	GGCC	2 cut(s)	403, 408
ApeKI	GCWGC	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	473
AspA2I	CCTAGG	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	521
AsuII	TTCGAA	1 cut(s)	718
AvrII	CCTAGG	1 cut(s)	598
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	36, 427, 679
BceAI	ACGGC	1 cut(s)	510
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	506, 670
BfaI	CTAG	4 cut(s)	89, 230, 327, 599
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	1 cut(s)	267
BlnI	CCTAGG	1 cut(s)	598
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	88, 569
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	180, 510
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	3 cut(s)	47, 252, 395
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMI	GCAATG	2 cut(s)	180, 510
BseMII	CTCAG	2 cut(s)	270, 392
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	405, 410
BsiHKAI	GWGCWC	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	617, 713
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	2 cut(s)	506, 670
BsmFI	GGGAC	2 cut(s)	617, 713
BsnI	GGCC	2 cut(s)	405, 410
Bso31I	GGTCTC	1 cut(s)	670
Bsp119I	TTCGAA	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	36, 127, 532, 580
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	405, 410
BspCNI	CTCAG	2 cut(s)	271, 391
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	2 cut(s)	307, 465
BspLI	GGNNCC	1 cut(s)	548
BspT104I	TTCGAA	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	180, 510
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	4 cut(s)	36, 127, 532, 580
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	609
BstBI	TTCGAA	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	358, 447
BstDEI	CTNAG	2 cut(s)	279, 378
BstF5I	GGATG	3 cut(s)	47, 252, 395
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	4 cut(s)	39, 130, 535, 583
BstMAI	GTCTC	2 cut(s)	506, 670
BstMBI	GATC	4 cut(s)	36, 127, 532, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 319
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	405, 410
BtsCI	GGATG	3 cut(s)	47, 252, 395
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	358, 447
CciI	TCATGA	2 cut(s)	307, 465
CseI	GACGC	1 cut(s)	74
CviAII	CATG	3 cut(s)	226, 308, 466
CviJI	RGCY	8 cut(s)	221, 242, 313, 322, 405, 410, 445, 666
CviKI_1	RGCY	8 cut(s)	221, 242, 313, 322, 405, 410, 445, 666
DdeI	CTNAG	2 cut(s)	279, 378
DpnI	GATC	4 cut(s)	38, 129, 534, 582
DpnII	GATC	4 cut(s)	36, 127, 532, 580
DraI	TTTAAA	2 cut(s)	457, 540
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	598
Eco31I	GGTCTC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	3 cut(s)	229, 311, 469
FaqI	GGGAC	2 cut(s)	617, 713
FatI	CATG	3 cut(s)	225, 307, 465
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	54, 239, 382
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	4 cut(s)	89, 230, 327, 599
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	405, 410
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	229, 311, 469
HphI	GGTGA	1 cut(s)	521
Hpy188I	TCNGA	4 cut(s)	41, 216, 280, 351
Hpy188III	TCNNGA	7 cut(s)	89, 193, 308, 327, 466, 530, 675
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	4 cut(s)	196, 280, 333, 626
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	2 cut(s)	331, 684
HpyCH4V	TGCA	3 cut(s)	20, 101, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 319
HpyF3I	CTNAG	2 cut(s)	279, 378
HpySE526I	ACGT	2 cut(s)	331, 684
Hsp92II	CATG	3 cut(s)	229, 311, 469
Kzo9I	GATC	4 cut(s)	36, 127, 532, 580
LmnI	GCTCC	2 cut(s)	442, 532
LpnPI	CCDG	7 cut(s)	79, 342, 392, 419, 543, 682, 693
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	88, 569
MaeI	CTAG	4 cut(s)	89, 230, 327, 599
MaeII	ACGT	2 cut(s)	331, 684
MaeIII	GTNAC	4 cut(s)	248, 490, 574, 619
MalI	GATC	4 cut(s)	38, 129, 534, 582
MboI	GATC	4 cut(s)	36, 127, 532, 580
MboII	GAAGA	2 cut(s)	376, 626
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	5 cut(s)	21, 138, 639, 659, 706
MnlI	CCTC	4 cut(s)	21, 181, 274, 610
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	456, 539, 647
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	82, 319
NdeII	GATC	4 cut(s)	36, 127, 532, 580
NlaIII	CATG	3 cut(s)	229, 311, 469
NlaIV	GGNNCC	1 cut(s)	548
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	718
PagI	TCATGA	2 cut(s)	307, 465
PdmI	GAANNNNTTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	532
SaqAI	TTAA	3 cut(s)	456, 539, 647
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	36, 127, 532, 580
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	2 cut(s)	88, 569
SfuI	TTCGAA	1 cut(s)	718
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	21, 138, 639, 659, 706
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	4 cut(s)	89, 230, 327, 599
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	2 cut(s)	334, 687
TaqI	TCGA	3 cut(s)	294, 674, 718
TasI	AATT	5 cut(s)	21, 138, 639, 659, 706
Tru1I	TTAA	3 cut(s)	456, 539, 647
Tru9I	TTAA	3 cut(s)	456, 539, 647
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	178, 324, 376, 482
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	556
XbaI	TCTAGA	2 cut(s)	88, 326
XceI	RCATGY	1 cut(s)	229
XmaJI	CCTAGG	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	4 cut(s)	89, 230, 327, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.