Rh7DG261000

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
27496886 .. 27501968
5083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG261000.1

Sequence Viewer

Length: 1548 bp
ATGGTAGGGCGAACGACAGTAGTGGTGGCACATCGTCTGTCCACTGTCAGGAATGCAGATCTTATTGCTGTTGTTCAAGAGGGGAAGATAGTTGAAACTGGGAGCCATGAGGAGCTAATTTCAAACCCCAACAGTGTCTATGCAGCACTTGTTCATCTACAAGAGACAGCTTCTTTGCAACGCCACCCCTCATTTGGTCCTAACTTAGGACAGCCACTAAGCATAAGGTATTCACGGGAGTTATCTCGTACTACAGCAAGTTTTGGTGCCAGCTTTCGCTCTGATAAAGAATCTCTTGGCCGTCCTGGTGGTGATGGAACAGAGATTAAGTCAAGATATGTTTCGGCTAGTAGACTGTATTCCATGATCCGTCCAGACTGGCACTATGGGGTGATTGGTACCATTGCTGCCCTTATTGCTGGAGCCCAGATGCCTCTTTTTGCTCTCGGGGTCTCTCAGGCTCTAGTTTCCTATTACATGGACTGGGAAACAACATGCCGTGAGGTTAAAAAGATCTCTTTACTCTTCTGTGGGGCTGCAGTGCTAACTGTCATTGTTCATGCTGTAGCTCATTTTTGTTTTGGAAATATGGGAGAGCGACTCACTCTTCGAGTTAGAGAGAAGATGTTTTCTGCAATTTTGAGGAATGAGATCGGATGGTTTGATGATACAAACAACACCAGTTCTATGCTTTCATCGCGTCTAGAAAGTGATGCAACTTTATTACGAACTATTGTTGTTGATCGCTCAACAATTCTTATACAGAATGTGGGTTTGATAGTTGCCTCATTTATCATTGCCTTCATCTTGAACTGGAGAATCACATTAGTGGTCTTAGCCACGTATCCTTTGATCATTAGTGGTCACATCAGCGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCACAGCATATCTGAAAGCTAACATGCTAGCTGGGGAAGCTGTAAGTAACATCCGCACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCATCGACCTATATGCTCATGAGCTTGTTGAGCCTTCTAGACGTTCATTTACTCGTGGTCAGATTGCTGGCATATTCTATGGTGTATCTCAGTTCTTCATATTCTCATCCTATGGCCTGGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTCGCTACCTTTAAATCTGTCATGAAATCATTCTTTGTTTTGATTGTAACGGCATTAGCAATGGGTGAGACTTTAGCACTTGCCCCAGATCTTTTAAAAGGGAACCAAATGGTGGCATCAGTCTTTGATGTAACAGATCGTAGAACAGAAGTCCTAGGGGACATAGGAGAAGAGGTTACGAAAGTGGAAGGGGCAATTGAGTTAAGGGGTGTTCAATTTAGCTACCCATCGAGACCAGACGTAGTGCTTTTCAGGGACTTCAATTTGAAAGTTCATTCAGGCAAAACTATGGCATTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATTTCTCTAATTCTCAGATTTTATGATCCGACAGCTGGGAAATTAATGGTAGATGACAGGACATGA

Protein Analysis

515

Amino Acids

56.57

Weight (kDa)

8.7

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 132 - 402 2.1e-48 ABC transporter transmembrane region
ABC_tran PF00005 469 - 513 1.6e-09 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22520
rosa_chinensis RchiOBHm_Chr2g0146401 RchiOBHm_Chr5g0040371
rosa_multiflora Rmu_sc0000147.1_g000027
rosa_samantha Rh7DG261000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 2 cut(s) 266, 398
AccB7I CCANNNNNTGG 1 cut(s) 1264
AccI GTMKAC 1 cut(s) 352
AccII CGCG 1 cut(s) 700
AciI CCGC 1 cut(s) 964
AclWI GGATC 2 cut(s) 361, 1502
AcoI YGGCCR 1 cut(s) 298
AfaI GTAC 2 cut(s) 250, 400
AfiI CCNNNNNNNGG 5 cut(s) 48, 194, 206, 1264, 1517
AgsI TTSAA 7 cut(s) 77, 95, 123, 811, 1367, 1414, 1420
AjnI CCWGG 2 cut(s) 304, 1113
AleI CACNNNNGTG 1 cut(s) 827
Alw21I GWGCWC 2 cut(s) 914, 1155
Alw26I GTCTC 4 cut(s) 158, 457, 1214, 1378
AlwI GGATC 2 cut(s) 361, 1502
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 3 cut(s) 298, 1111, 1116
ApeKI GCWGC 4 cut(s) 143, 407, 536, 974
ArsI GACNNNNNNTTYG 4 cut(s) 157, 189, 591, 623
AseI ATTAAT 1 cut(s) 1526
Asp700I GAANNNNTTC 2 cut(s) 881, 1181
Asp718I GGTACC 1 cut(s) 398
AspA2I CCTAGG 1 cut(s) 1306
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 3 cut(s) 323, 403, 1229
AsuNHI GCTAGC 1 cut(s) 937
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 1306
BanI GGYRCC 2 cut(s) 266, 398
BanII GRGCYC 2 cut(s) 427, 1155
BauI CACGAG 1 cut(s) 1050
Bbv12I GWGCWC 2 cut(s) 914, 1155
BbvI GCAGC 4 cut(s) 155, 394, 523, 961
BccI CCATC 4 cut(s) 308, 651, 1135, 1387
BceAI ACGGC 3 cut(s) 285, 483, 1218
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 2 cut(s) 306, 1115
BciVI GTATCC 1 cut(s) 855
BclI TGATCA 1 cut(s) 852
BcoDI GTCTC 4 cut(s) 158, 457, 1214, 1378
BfaI CTAG 6 cut(s) 348, 464, 704, 938, 1035, 1307
BfmI CTRYAG 3 cut(s) 252, 537, 564
BfuI GTATCC 1 cut(s) 855
BglII AGATCT 3 cut(s) 58, 513, 1240
BisI GCNGC 4 cut(s) 144, 408, 537, 975
BlnI CCTAGG 1 cut(s) 1306
BlsI GCNGC 4 cut(s) 145, 409, 538, 976
Bme1390I CCNGG 2 cut(s) 306, 1115
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 5 cut(s) 104, 268, 400, 424, 1256
BmrFI CCNGG 2 cut(s) 306, 1115
BmrI ACTGGG 2 cut(s) 108, 493
BmsI GCATC 3 cut(s) 420, 703, 1277
BmtI GCTAGC 1 cut(s) 941
BmuI ACTGGG 2 cut(s) 108, 493
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 2 cut(s) 441, 835
BpuEI CTTGAG 1 cut(s) 928
BsaAI YACGTR 1 cut(s) 843
BsaI GGTCTC 2 cut(s) 457, 1378
BsaJI CCNNGG 1 cut(s) 1306
BsaXI ACNNNNNCTCC 2 cut(s) 1311, 1341
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 194, 206, 1264, 1517
Bse1I ACTGG 5 cut(s) 103, 383, 488, 681, 818
Bse3DI GCAATG 3 cut(s) 402, 795, 1218
BseBI CCWGG 2 cut(s) 306, 1115
BseDI CCNNGG 1 cut(s) 1306
BseGI GGATG 3 cut(s) 662, 960, 1103
BseLI CCNNNNNNNGG 5 cut(s) 48, 194, 206, 1264, 1517
BseMI GCAATG 3 cut(s) 402, 795, 1218
BseMII CTCAG 4 cut(s) 470, 978, 1100, 1510
BseNI ACTGG 5 cut(s) 103, 383, 488, 681, 818
BseRI GAGGAG 2 cut(s) 125, 1004
BseXI GCAGC 4 cut(s) 155, 394, 523, 961
BseYI CCCAGC 2 cut(s) 941, 1517
Bsh1236I CGCG 1 cut(s) 700
BshFI GGCC 3 cut(s) 300, 1113, 1118
BshNI GGYRCC 2 cut(s) 266, 398
BsiHKAI GWGCWC 2 cut(s) 914, 1155
BsiHKCI CYCGRG 1 cut(s) 446
BslFI GGGAC 2 cut(s) 1325, 1421
BslI CCNNNNNNNGG 5 cut(s) 48, 194, 206, 1264, 1517
BsmAI GTCTC 4 cut(s) 158, 457, 1214, 1378
BsmFI GGGAC 2 cut(s) 1325, 1421
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 3 cut(s) 300, 1113, 1118
Bso31I GGTCTC 2 cut(s) 457, 1378
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 427, 914, 1155
Bsp143I GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
BspACI CCGC 1 cut(s) 964
BspANI GGCC 3 cut(s) 300, 1113, 1118
BspCNI CTCAG 4 cut(s) 469, 979, 1099, 1509
BspFNI CGCG 1 cut(s) 700
BspHI TCATGA 3 cut(s) 885, 1015, 1173
BspLI GGNNCC 5 cut(s) 104, 268, 400, 424, 1256
BspMAI CTGCAG 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 941
BspPI GGATC 2 cut(s) 361, 1502
BspT107I GGYRCC 2 cut(s) 266, 398
BspTNI GGTCTC 2 cut(s) 457, 1378
BsrDI GCAATG 3 cut(s) 402, 795, 1218
BsrI ACTGG 5 cut(s) 103, 383, 488, 681, 818
BssECI CCNNGG 1 cut(s) 1306
BssMI GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
BssSI CACGAG 1 cut(s) 1050
BssT1I CCWWGG 1 cut(s) 1306
Bst2BI CACGAG 1 cut(s) 1050
Bst2UI CCWGG 2 cut(s) 306, 1115
Bst4CI ACNGT 6 cut(s) 19, 46, 134, 357, 550, 970
Bst6I CTCTTC 3 cut(s) 530, 612, 1317
BstBAI YACGTR 1 cut(s) 843
BstC8I GCNNGC 4 cut(s) 271, 939, 1066, 1155
BstDEI CTNAG 7 cut(s) 205, 218, 456, 835, 987, 1086, 1496
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 662, 960, 1103
BstFNI CGCG 1 cut(s) 700
BstKTI GATC 9 cut(s) 61, 369, 516, 654, 745, 855, 1243, 1291, 1510
BstMAI GTCTC 4 cut(s) 158, 457, 1214, 1378
BstMBI GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
BstMWI GCNNNNNNNGC 6 cut(s) 416, 697, 900, 909, 947, 1027
BstNI CCWGG 2 cut(s) 306, 1115
BstNSI RCATGY 2 cut(s) 498, 937
BstSCI CCNGG 2 cut(s) 304, 1113
BstSFI CTRYAG 3 cut(s) 252, 537, 564
BstUI CGCG 1 cut(s) 700
BstV1I GCAGC 4 cut(s) 155, 394, 523, 961
BstX2I RGATCY 3 cut(s) 58, 513, 1240
BstYI RGATCY 3 cut(s) 58, 513, 1240
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 3 cut(s) 300, 1113, 1118
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 3 cut(s) 662, 960, 1103
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 4 cut(s) 42, 139, 546, 966
Cac8I GCNNGC 4 cut(s) 271, 939, 1066, 1155
CciI TCATGA 3 cut(s) 885, 1015, 1173
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 249, 399
CviQI GTAC 2 cut(s) 249, 399
DdeI CTNAG 7 cut(s) 205, 218, 456, 835, 987, 1086, 1496
DpnI GATC 9 cut(s) 60, 368, 515, 653, 744, 854, 1242, 1290, 1509
DpnII GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
DraI TTTAAA 2 cut(s) 1165, 1248
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 530, 612, 1317
EarI CTCTTC 3 cut(s) 530, 612, 1317
Ecl136II GAGCTC 1 cut(s) 1153
Eco130I CCWWGG 1 cut(s) 1306
Eco24I GRGCYC 2 cut(s) 427, 1155
Eco31I GGTCTC 2 cut(s) 457, 1378
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 1153
Eco88I CYCGRG 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 1153
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 304, 1113
EcoT14I CCWWGG 1 cut(s) 1306
EcoT38I GRGCYC 2 cut(s) 427, 1155
ErhI CCWWGG 1 cut(s) 1306
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 2 cut(s) 1325, 1421
FbaI TGATCA 1 cut(s) 852
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 144, 408, 537, 975
FokI GGATG 3 cut(s) 669, 947, 1090
FriOI GRGCYC 2 cut(s) 427, 1155
Fsp4HI GCNGC 4 cut(s) 144, 408, 537, 975
FspBI CTAG 6 cut(s) 348, 464, 704, 938, 1035, 1307
GluI GCNGC 4 cut(s) 144, 408, 537, 975
GsaI CCCAGC 2 cut(s) 945, 1521
GsuI CTGGAG 2 cut(s) 441, 835
HaeIII GGCC 3 cut(s) 300, 1113, 1118
HgaI GACGC 1 cut(s) 689
HinfI GANTC 3 cut(s) 290, 600, 819
HphI GGTGA 3 cut(s) 323, 403, 1229
Hpy166II GTNNAC 2 cut(s) 42, 353
Hpy188I TCNGA 7 cut(s) 283, 656, 924, 988, 1059, 1499, 1512
Hpy8I GTNNAC 2 cut(s) 42, 353
HpyAV CCTTC 4 cut(s) 811, 988, 1041, 1334
HpyCH4III ACNGT 6 cut(s) 19, 46, 134, 357, 550, 970
HpyCH4IV ACGT 3 cut(s) 842, 1039, 1392
HpyCH4V TGCA 7 cut(s) 56, 143, 178, 539, 635, 716, 977
HpyF10VI GCNNNNNNNGC 6 cut(s) 416, 697, 900, 909, 947, 1027
HpyF3I CTNAG 7 cut(s) 205, 218, 456, 835, 987, 1086, 1496
HpySE526I ACGT 3 cut(s) 842, 1039, 1392
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
LmnI GCTCC 4 cut(s) 102, 112, 422, 1150
Lsp1109I GCAGC 4 cut(s) 155, 394, 523, 961
LweI GCATC 3 cut(s) 420, 703, 1277
MaeI CTAG 6 cut(s) 348, 464, 704, 938, 1035, 1307
MaeII ACGT 3 cut(s) 842, 1039, 1392
MaeIII GTNAC 5 cut(s) 863, 956, 1198, 1282, 1327
MalI GATC 9 cut(s) 60, 368, 515, 653, 744, 854, 1242, 1290, 1509
MboI GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
MboII GAAGA 6 cut(s) 97, 517, 599, 634, 1084, 1334
MfeI CAATTG 1 cut(s) 1347
MflI RGATCY 3 cut(s) 58, 513, 1240
MhlI GDGCHC 3 cut(s) 427, 914, 1155
MluCI AATT 8 cut(s) 117, 636, 753, 1347, 1367, 1414, 1491, 1523
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 1 cut(s) 1535
MnlI CCTC 9 cut(s) 73, 103, 199, 444, 496, 636, 796, 982, 1318
MroXI GAANNNNTTC 2 cut(s) 881, 1181
MseI TTAA 6 cut(s) 327, 507, 1164, 1247, 1355, 1526
MslI CAYNNNNRTG 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 1517
MspR9I CCNGG 2 cut(s) 306, 1115
MunI CAATTG 1 cut(s) 1347
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 2 cut(s) 306, 1115
MvnI CGCG 1 cut(s) 700
MwoI GCNNNNNNNGC 6 cut(s) 416, 697, 900, 909, 947, 1027
NdeII GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
NheI GCTAGC 1 cut(s) 937
NlaIV GGNNCC 5 cut(s) 104, 268, 400, 424, 1256
NmuCI GTSAC 1 cut(s) 863
NspI RCATGY 2 cut(s) 498, 937
OliI CACNNNNGTG 1 cut(s) 827
PagI TCATGA 3 cut(s) 885, 1015, 1173
PctI GAATGC 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 881, 1181
PfeI GAWTC 2 cut(s) 290, 819
PflMI CCANNNNNTGG 1 cut(s) 1264
PkrI GCNGC 4 cut(s) 145, 409, 538, 976
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
Ppu21I YACGTR 1 cut(s) 843
PshBI ATTAAT 1 cut(s) 1526
Psp124BI GAGCTC 1 cut(s) 1155
Psp6I CCWGG 2 cut(s) 304, 1113
PspFI CCCAGC 2 cut(s) 941, 1517
PspGI CCWGG 2 cut(s) 304, 1113
PspN4I GGNNCC 5 cut(s) 104, 268, 400, 424, 1256
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 3 cut(s) 58, 513, 1240
PvuII CAGCTG 1 cut(s) 1517
RsaI GTAC 2 cut(s) 250, 400
RsaNI GTAC 2 cut(s) 249, 399
RseI CAYNNNNRTG 1 cut(s) 827
SacI GAGCTC 1 cut(s) 1155
SaqAI TTAA 6 cut(s) 327, 507, 1164, 1247, 1355, 1526
SatI GCNGC 4 cut(s) 144, 408, 537, 975
Sau3AI GATC 9 cut(s) 58, 366, 513, 651, 742, 852, 1240, 1288, 1507
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 2 cut(s) 306, 1115
SduI GDGCHC 3 cut(s) 427, 914, 1155
SfaNI GCATC 3 cut(s) 420, 703, 1277
SfcI CTRYAG 3 cut(s) 252, 537, 564
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
Sse9I AATT 8 cut(s) 117, 636, 753, 1347, 1367, 1414, 1491, 1523
SsiI CCGC 1 cut(s) 964
SspMI CTAG 6 cut(s) 348, 464, 704, 938, 1035, 1307
SstI GAGCTC 1 cut(s) 1155
StyD4I CCNGG 2 cut(s) 304, 1113
StyI CCWWGG 1 cut(s) 1306
TaaI ACNGT 6 cut(s) 19, 46, 134, 357, 550, 970
TaiI ACGT 3 cut(s) 845, 1042, 1395
TaqI TCGA 3 cut(s) 610, 1002, 1382
TasI AATT 8 cut(s) 117, 636, 753, 1347, 1367, 1414, 1491, 1523
TfiI GAWTC 2 cut(s) 290, 819
Tru1I TTAA 6 cut(s) 327, 507, 1164, 1247, 1355, 1526
Tru9I TTAA 6 cut(s) 327, 507, 1164, 1247, 1355, 1526
TscAI CASTG 4 cut(s) 49, 139, 546, 973
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 4 cut(s) 143, 407, 536, 974
Tsp45I GTSAC 1 cut(s) 863
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 4 cut(s) 49, 139, 546, 973
Van91I CCANNNNNTGG 1 cut(s) 1264
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 1526
XagI CCTNNNNNAGG 1 cut(s) 204
XbaI TCTAGA 2 cut(s) 703, 1034
XceI RCATGY 2 cut(s) 498, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmaJI CCTAGG 1 cut(s) 1306
XmiI GTMKAC 1 cut(s) 352
XmnI GAANNNNTTC 2 cut(s) 881, 1181
XspI CTAG 6 cut(s) 348, 464, 704, 938, 1035, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.