Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019895

Physical Location & Seq

Genomic Coordinates Reverse (-)

64635096 .. 64636145

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGAAGCAGGAGTCATTGTCCACGTGATAAGCATGGAAGGAAGAAGGTTGCCTGGACTGCTTTTGAAGACCAGATTGTGAAAGACTACGTCAAAAACCACGGTGCAGGCAAATGGGACAAGCTATCTAAGGAAACTGGCGAGTGTCTGAAGAGATCCGGAAACAGTGTTAGACTTAGATGGTTGAATTATCTGAGGCCTGATATCAACACAAGTAGTATTACAGAATACGAAGAAGATCTTCTCATCAGGCTCCATAAACTCTTGGGCAACAGATGGTCATTGATAGCCAGAAGGATACCAGGCAGAACTGAAAATCAAGTTAAAAACTACTGGAATTCTACCTTGAAGAAGAAGCTGTCACAAAAAAATTTATGCGAAGAGCTTTGTAATTGGACTTTGGAGGACTCGTCATCCCCCGTTCCTACCACCGACCAGGACGACCCACATTGGACAAAAAAAAATGTTTATGAAGAAGGTCAAGCATGTCAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

165

Amino Acids

19.23

Weight (kDa)

9.19

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 65	4.7e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 79	1.5e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 115	2.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 124	1.7e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146961
rosa_laevigata	RLG00000020234
rosa_multiflora	Rmu_sc0003317.1_g000023
rosa_roxburghii	Rroxscaffold_2G00099800
rosa_samantha	Rh2CG441800
rosa_wichuraiana	Rw2G037100 Rw2G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	158
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	337, 370
AcuI	CTGAAG	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	68, 187, 349
AjnI	CCWGG	3 cut(s)	53, 301, 435
AluBI	AGCT	3 cut(s)	124, 358, 385
AluI	AGCT	3 cut(s)	124, 358, 385
AlwI	GGATC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	337, 370
Asp700I	GAANNNNTTC	1 cut(s)	240
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	2 cut(s)	174, 270
BciT130I	CCWGG	3 cut(s)	55, 303, 437
BciVI	GTATCC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	55, 303, 437
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	3 cut(s)	55, 303, 437
BpiI	GAAGAC	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 395, 425
Bse1I	ACTGG	2 cut(s)	142, 338
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	3 cut(s)	55, 303, 437
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	142, 338
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	155, 238
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	186
BspEI	TCCGGA	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	142, 338
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	155, 238
Bst2UI	CCWGG	3 cut(s)	55, 303, 437
Bst4CI	ACNGT	2 cut(s)	104, 167
Bst6I	CTCTTC	2 cut(s)	146, 375
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	129, 176, 194
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	413
BstKTI	GATC	2 cut(s)	158, 241
BstMBI	GATC	2 cut(s)	155, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	3 cut(s)	55, 303, 437
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	3 cut(s)	53, 301, 435
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	155, 238
BstYI	RGATCY	2 cut(s)	155, 238
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	109
CviAII	CATG	2 cut(s)	35, 486
CviJI	RGCY	6 cut(s)	124, 199, 253, 290, 358, 385
CviKI_1	RGCY	6 cut(s)	124, 199, 253, 290, 358, 385
DdeI	CTNAG	3 cut(s)	129, 176, 194
DpnI	GATC	2 cut(s)	157, 240
DpnII	GATC	2 cut(s)	155, 238
Eam1104I	CTCTTC	2 cut(s)	146, 375
EarI	CTCTTC	2 cut(s)	146, 375
Eco147I	AGGCCT	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	3 cut(s)	53, 301, 435
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	2 cut(s)	38, 489
FaiI	YATR	5 cut(s)	36, 258, 376, 471, 487
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	34, 485
FokI	GGATG	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	38, 489
HinfI	GANTC	2 cut(s)	13, 407
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	150, 195
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	4 cut(s)	33, 40, 288, 470
HpyCH4III	ACNGT	2 cut(s)	104, 167
HpyCH4IV	ACGT	2 cut(s)	25, 90
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	129, 176, 194
HpySE526I	ACGT	2 cut(s)	25, 90
Hsp92II	CATG	2 cut(s)	38, 489
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	155, 238
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	258
MaeII	ACGT	2 cut(s)	25, 90
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	157, 240
MboI	GATC	2 cut(s)	155, 238
MflI	RGATCY	2 cut(s)	155, 238
MluCI	AATT	4 cut(s)	187, 337, 370, 391
MlyI	GAGTC	2 cut(s)	22, 401
MnlI	CCTC	2 cut(s)	189, 397
MroI	TCCGGA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	1 cut(s)	324
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	3 cut(s)	55, 303, 437
MvaI	CCWGG	3 cut(s)	55, 303, 437
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	155, 238
NlaIII	CATG	2 cut(s)	38, 489
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	21, 401
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	2 cut(s)	21, 401
Ppu21I	YACGTR	1 cut(s)	26
Psp6I	CCWGG	3 cut(s)	53, 301, 435
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	3 cut(s)	53, 301, 435
PspN4I	GGNNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	155, 238
PsyI	GACNNNGTC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	155, 238
SchI	GAGTC	2 cut(s)	22, 401
ScrFI	CCNGG	3 cut(s)	55, 303, 437
SetI	ASST	8 cut(s)	28, 51, 93, 126, 347, 360, 387, 481
Sse9I	AATT	4 cut(s)	187, 337, 370, 391
SseBI	AGGCCT	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	3 cut(s)	53, 301, 435
TaaI	ACNGT	2 cut(s)	104, 167
TaiI	ACGT	2 cut(s)	28, 93
TasI	AATT	4 cut(s)	187, 337, 370, 391
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	337, 370
XceI	RCATGY	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.