Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019895

Physical Location & Seq

Genomic Coordinates Reverse (-)

62701494 .. 62702246

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCGAAGCAGGAGTCATTGTCGTAATAAGCATGGAAGGAAGAAGGTTGCCTGGACTGCTTTTGAAGACCAGATTGTGAAAGACTACGTCAAAAACCACGAAGATGCCCAGATTAATATATGGCTGAGGATGGGGTGTGCAGGTCTGAAGAGATCCGGAAACAGTGTTAGACTTAGATGGTTGAATTATCTGAGGCCTGATATCAACACAAGTAGTATTACAGAATACGAAGAAGATCTTCTCATCAGGCTCCATAAACTCTTGGGCAACAGATGGTCATTGATAGCCAGAAGGATACCAGGCAGAACTGAAAATCAGGTTAAAAACTACTGGAATTCTACCTTAAAGAAGAAGCTGCCACAAGAAAATTTCTGCGAAGAGCTTTGTAATCGGACTTTGGAGGACTCGTCATCCCCCGTTCCTACCACCGACCAGGATGTTTATGAAGAAAGTCAAGCATCACCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

157

Amino Acids

18.32

Weight (kDa)

9.25

Isoelectric Point (pI)

69.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 64	3.8e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	1.2e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 114	2.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 126	1.4e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146961
rosa_laevigata	RLG00000020234
rosa_multiflora	Rmu_sc0003317.1_g000023
rosa_roxburghii	Rroxscaffold_2G00099800
rosa_samantha	Rh2CG441800
rosa_wichuraiana	Rw2G037100 Rw2G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	334, 367
AcuI	CTGAAG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	65, 184
AjnI	CCWGG	3 cut(s)	50, 298, 432
AluBI	AGCT	2 cut(s)	355, 382
AluI	AGCT	2 cut(s)	355, 382
AlwI	GGATC	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	334, 367
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	3 cut(s)	124, 171, 267
BciT130I	CCWGG	3 cut(s)	52, 300, 434
BciVI	GTATCC	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	52, 300, 434
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	3 cut(s)	52, 300, 434
BmsI	GCATC	2 cut(s)	94, 467
BpiI	GAAGAC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 392, 422
Bse1I	ACTGG	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	3 cut(s)	52, 300, 434
BseGI	GGATG	3 cut(s)	135, 410, 442
BseMII	CTCAG	2 cut(s)	116, 182
BseNI	ACTGG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	342
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	152, 235
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	117, 183
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	152, 235
Bst2UI	CCWGG	3 cut(s)	52, 300, 434
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	2 cut(s)	143, 372
BstDEI	CTNAG	3 cut(s)	125, 173, 191
BstF5I	GGATG	3 cut(s)	135, 410, 442
BstKTI	GATC	2 cut(s)	155, 238
BstMBI	GATC	2 cut(s)	152, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	3 cut(s)	52, 300, 434
BstSCI	CCNGG	3 cut(s)	50, 298, 432
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	152, 235
BstYI	RGATCY	2 cut(s)	152, 235
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	135, 410, 442
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	131
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	6 cut(s)	124, 196, 250, 287, 355, 382
CviKI_1	RGCY	6 cut(s)	124, 196, 250, 287, 355, 382
DdeI	CTNAG	3 cut(s)	125, 173, 191
DpnI	GATC	2 cut(s)	154, 237
DpnII	GATC	2 cut(s)	152, 235
Eam1104I	CTCTTC	2 cut(s)	143, 372
EarI	CTCTTC	2 cut(s)	143, 372
Eco147I	AGGCCT	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	50, 298, 432
EcoRV	GATATC	1 cut(s)	202
FaeI	CATG	1 cut(s)	35
FaiI	YATR	5 cut(s)	33, 119, 121, 255, 444
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	3 cut(s)	142, 397, 449
Fsp4HI	GCNGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	13, 404
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	147, 192, 393
Hpy188III	TCNNGA	2 cut(s)	156, 468
HpyAV	CCTTC	3 cut(s)	30, 37, 285
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	125, 173, 191
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	152, 235
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	2 cut(s)	94, 467
MaeII	ACGT	1 cut(s)	87
MalI	GATC	2 cut(s)	154, 237
MboI	GATC	2 cut(s)	152, 235
MflI	RGATCY	2 cut(s)	152, 235
MluCI	AATT	3 cut(s)	184, 334, 367
MlyI	GAGTC	2 cut(s)	22, 398
MnlI	CCTC	3 cut(s)	120, 186, 394
MroI	TCCGGA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	114, 321, 344
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	52, 300, 434
MvaI	CCWGG	3 cut(s)	52, 300, 434
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	2 cut(s)	152, 235
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	2 cut(s)	21, 398
PpsI	GAGTC	2 cut(s)	21, 398
PshBI	ATTAAT	1 cut(s)	114
Psp6I	CCWGG	3 cut(s)	50, 298, 432
PspGI	CCWGG	3 cut(s)	50, 298, 432
PspN4I	GGNNCC	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	152, 235
PsyI	GACNNNGTC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	114, 321, 344
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	2 cut(s)	152, 235
SchI	GAGTC	2 cut(s)	22, 398
ScrFI	CCNGG	3 cut(s)	52, 300, 434
SetI	ASST	7 cut(s)	48, 90, 145, 321, 344, 357, 384
SfaNI	GCATC	2 cut(s)	94, 467
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	184, 334, 367
SseBI	AGGCCT	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	3 cut(s)	50, 298, 432
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	90
TasI	AATT	3 cut(s)	184, 334, 367
Tru1I	TTAA	3 cut(s)	114, 321, 344
Tru9I	TTAA	3 cut(s)	114, 321, 344
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	2 cut(s)	334, 367
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.