Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019895

Physical Location & Seq

Genomic Coordinates Forward (+)

21572955 .. 21574067

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAAGCAGGAGTCATTGTCGTGATAAGCATGGAAGGAAGAAGGTTGCCTGGACTGGTTTTGAAGACCAGATTGTGAAAGACTACGTCAAAAACCACGGTGTAGGCAAATGGGACAAACTATCTAAGGAAACTGGCAAGTGTCTGAAGAGATCCGGAAACAGTGTTAGACTTAGATGGTTGAATTATCTGAGGCCTGATATCAACACAAGTAGTATTACAGAATACGAAGAAGATCTTCTCATCAGGCTCCATAAACTCTTGGGCAACAGATGGTCATTGATAGCCAGAAGGATACCAGGTAGAACTGAAAATCAAGTTAAAAACTACTGGAATTCTACCTTAAAGAAGAAGCTGCCACAAGAAAATTTCTGCGAAGAGCTTTGTAATCGGACTTTGGAGGACTCGTCATCCCCCGTTCCTACCACCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

144

Amino Acids

16.84

Weight (kDa)

9.63

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 64	4.7e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	5.7e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 114	1.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 126	1.2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146961
rosa_laevigata	RLG00000020234
rosa_multiflora	Rmu_sc0003317.1_g000023
rosa_roxburghii	Rroxscaffold_2G00099800
rosa_samantha	Rh2CG441800
rosa_wichuraiana	Rw2G037100 Rw2G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	334, 367
AcuI	CTGAAG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	65, 184
AjnI	CCWGG	2 cut(s)	50, 298
AluBI	AGCT	2 cut(s)	355, 382
AluI	AGCT	2 cut(s)	355, 382
AlwI	GGATC	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	334, 367
Asp700I	GAANNNNTTC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	171, 267
BciT130I	CCWGG	2 cut(s)	52, 300
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	52, 300
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	52, 300
BpiI	GAAGAC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 392, 422
Bse1I	ACTGG	3 cut(s)	61, 139, 335
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	52, 300
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	3 cut(s)	61, 139, 335
BseXI	GCAGC	1 cut(s)	342
BshFI	GGCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	152, 235
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	183
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	61, 139, 335
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	152, 235
Bst2UI	CCWGG	2 cut(s)	52, 300
Bst4CI	ACNGT	2 cut(s)	101, 164
Bst6I	CTCTTC	2 cut(s)	143, 372
BstDEI	CTNAG	3 cut(s)	126, 173, 191
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	410
BstKTI	GATC	2 cut(s)	155, 238
BstMBI	GATC	2 cut(s)	152, 235
BstNI	CCWGG	2 cut(s)	52, 300
BstSCI	CCNGG	2 cut(s)	50, 298
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	152, 235
BstYI	RGATCY	2 cut(s)	152, 235
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	298
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	5 cut(s)	196, 250, 287, 355, 382
CviKI_1	RGCY	5 cut(s)	196, 250, 287, 355, 382
DdeI	CTNAG	3 cut(s)	126, 173, 191
DpnI	GATC	2 cut(s)	154, 237
DpnII	GATC	2 cut(s)	152, 235
Eam1104I	CTCTTC	2 cut(s)	143, 372
EarI	CTCTTC	2 cut(s)	143, 372
Eco147I	AGGCCT	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	50, 298
EcoRV	GATATC	1 cut(s)	202
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 255
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	433
GluI	GCNGC	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	13, 404
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	147, 192, 393
Hpy188III	TCNNGA	2 cut(s)	23, 156
HpyAV	CCTTC	3 cut(s)	30, 37, 285
HpyCH4III	ACNGT	2 cut(s)	101, 164
HpyCH4IV	ACGT	1 cut(s)	87
HpyF3I	CTNAG	3 cut(s)	126, 173, 191
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	152, 235
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	342
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	1 cut(s)	433
MaeII	ACGT	1 cut(s)	87
MalI	GATC	2 cut(s)	154, 237
MboI	GATC	2 cut(s)	152, 235
MboII	GAAGA	8 cut(s)	52, 77, 160, 230, 242, 245, 361, 389
MflI	RGATCY	2 cut(s)	152, 235
MluCI	AATT	3 cut(s)	184, 334, 367
MlyI	GAGTC	2 cut(s)	22, 398
MnlI	CCTC	2 cut(s)	186, 394
MroI	TCCGGA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	321, 344
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	52, 300
MvaI	CCWGG	2 cut(s)	52, 300
NdeII	GATC	2 cut(s)	152, 235
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	2 cut(s)	21, 398
PpsI	GAGTC	2 cut(s)	21, 398
Psp6I	CCWGG	2 cut(s)	50, 298
PspGI	CCWGG	2 cut(s)	50, 298
PspN4I	GGNNCC	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	152, 235
PsyI	GACNNNGTC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	321, 344
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	2 cut(s)	152, 235
SchI	GAGTC	2 cut(s)	22, 398
ScrFI	CCNGG	2 cut(s)	52, 300
SetI	ASST	6 cut(s)	48, 90, 304, 344, 357, 384
SexAI	ACCWGGT	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	3 cut(s)	184, 334, 367
SseBI	AGGCCT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	433
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	50, 298
TaaI	ACNGT	2 cut(s)	101, 164
TaiI	ACGT	1 cut(s)	90
TasI	AATT	3 cut(s)	184, 334, 367
Tru1I	TTAA	2 cut(s)	321, 344
Tru9I	TTAA	2 cut(s)	321, 344
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	355
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	334, 367
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.