Rh2CG441800
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019895
Physical Location & Seq
Reverse (-)
59864235 .. 59873104
8870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG441800.1

Sequence Viewer

Length: 432 bp
ATGGGAAGCAGGAGTCATTGTCGACGTGATAAGCATGGAAGGAAGAAGGTTGCCTGGACTGCTTTTGAAGACCAGATTGTGAAAGACTACGTCAAAAACCACGGTGCAGGCAAATGGGACAAGCTATCTAAGGAAACTGGTCTGAAGAGATCCGGAAACAGTGTTAGACTTAGATGGTTGAATTATCTGAGGCCTGATATCAACACAAGTAGTATTACAGAATACGAAGAAGATCTTCTCATCAGGCTCCATAAACTCTTGGGCAACAGATGGTCATTGATAGCTAGAAGGATACCAGGCAGAACTGAAAATCAGGTTAAAAACTACTGGAATTCTACCTTAAAGAAGAAGTTGCCACAAGAAAATTTCTGCGAAGAGCTTTGTAATCGGACTTTGGAGGACTCGTCATCCCCCGTTCCTACCACCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

143

Amino Acids

16.76

Weight (kDa)

9.74

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 63 5.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 19 - 76 1.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 73 - 113 1.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 125 1.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019895)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0146961
rosa_laevigata RLG00000020234
rosa_multiflora Rmu_sc0003317.1_g000023
rosa_roxburghii Rroxscaffold_2G00099800
rosa_samantha Rh2CG441800
rosa_wichuraiana Rw2G037100 Rw2G037200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 152
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 331, 364
AcuI CTGAAG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 68, 181
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 2 cut(s) 53, 295
AluBI AGCT 3 cut(s) 124, 284, 379
AluI AGCT 3 cut(s) 124, 284, 379
AlwI GGATC 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 331, 364
Asp700I GAANNNNTTC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 2 cut(s) 168, 264
BciT130I CCWGG 2 cut(s) 55, 297
BciVI GTATCC 1 cut(s) 285
BfaI CTAG 2 cut(s) 285, 430
BfuI GTATCC 1 cut(s) 285
BglII AGATCT 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 55, 297
BmgBI CACGTC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 55, 297
BpiI GAAGAC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 3 cut(s) 34, 389, 419
Bse1I ACTGG 2 cut(s) 142, 332
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 2 cut(s) 55, 297
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 142, 332
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 193
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 149, 232
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 180
BspEI TCCGGA 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 142, 332
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 149, 232
Bst2UI CCWGG 2 cut(s) 55, 297
Bst4CI ACNGT 2 cut(s) 104, 161
Bst6I CTCTTC 2 cut(s) 140, 369
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 129, 170, 188
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 2 cut(s) 152, 235
BstMBI GATC 2 cut(s) 149, 232
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 2 cut(s) 55, 297
BstSCI CCNGG 2 cut(s) 53, 295
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 149, 232
BstYI RGATCY 2 cut(s) 149, 232
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 100
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 109
CviAII CATG 1 cut(s) 35
CviJI RGCY 5 cut(s) 124, 193, 247, 284, 379
CviKI_1 RGCY 5 cut(s) 124, 193, 247, 284, 379
DdeI CTNAG 3 cut(s) 129, 170, 188
DpnI GATC 2 cut(s) 151, 234
DpnII GATC 2 cut(s) 149, 232
Eam1104I CTCTTC 2 cut(s) 140, 369
EarI CTCTTC 2 cut(s) 140, 369
Eco147I AGGCCT 1 cut(s) 193
Eco32I GATATC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 53, 295
EcoRV GATATC 1 cut(s) 199
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 252
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 22
FokI GGATG 1 cut(s) 394
FspBI CTAG 2 cut(s) 285, 430
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 153
Hin1II CATG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 2 cut(s) 13, 401
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 144, 189, 390
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 33, 40, 282
HpyCH4III ACNGT 2 cut(s) 104, 161
HpyCH4IV ACGT 2 cut(s) 25, 90
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 129, 170, 188
HpySE526I ACGT 2 cut(s) 25, 90
Hsp92II CATG 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 152
Kzo9I GATC 2 cut(s) 149, 232
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 252
MaeI CTAG 2 cut(s) 285, 430
MaeII ACGT 2 cut(s) 25, 90
MalI GATC 2 cut(s) 151, 234
MboI GATC 2 cut(s) 149, 232
MboII GAAGA 8 cut(s) 55, 80, 157, 227, 239, 242, 358, 386
MflI RGATCY 2 cut(s) 149, 232
MluCI AATT 3 cut(s) 181, 331, 364
MlyI GAGTC 2 cut(s) 22, 395
MnlI CCTC 2 cut(s) 183, 391
MroI TCCGGA 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 2 cut(s) 318, 341
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 55, 297
MvaI CCWGG 2 cut(s) 55, 297
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 2 cut(s) 149, 232
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 89
PleI GAGTC 2 cut(s) 21, 395
PpsI GAGTC 2 cut(s) 21, 395
Psp6I CCWGG 2 cut(s) 53, 295
PspGI CCWGG 2 cut(s) 53, 295
PspN4I GGNNCC 1 cut(s) 248
PsuI RGATCY 2 cut(s) 149, 232
PsyI GACNNNGTC 1 cut(s) 89
SalI GTCGAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 318, 341
Sau3AI GATC 2 cut(s) 149, 232
SchI GAGTC 2 cut(s) 22, 395
ScrFI CCNGG 2 cut(s) 55, 297
SetI ASST 8 cut(s) 28, 51, 93, 126, 286, 318, 341, 381
Sse9I AATT 3 cut(s) 181, 331, 364
SseBI AGGCCT 1 cut(s) 193
SspMI CTAG 2 cut(s) 285, 430
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 2 cut(s) 53, 295
TaaI ACNGT 2 cut(s) 104, 161
TaiI ACGT 2 cut(s) 28, 93
TaqI TCGA 1 cut(s) 22
TasI AATT 3 cut(s) 181, 331, 364
Tru1I TTAA 2 cut(s) 318, 341
Tru9I TTAA 2 cut(s) 318, 341
TscAI CASTG 1 cut(s) 166
TspRI CASTG 1 cut(s) 166
Tth111I GACNNNGTC 1 cut(s) 89
XapI RAATTY 2 cut(s) 331, 364
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 285, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.