RchiOBHm_Chr2g0148241

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017487
Physical Location & Seq
Forward (+)
65862194 .. 65862355
162 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGGATGTCGTTCAAGTTCAACACTGCAAGAAGACAAAGAGAAGCAGGCGTGGCTTCAGTGGCAAATGTGCTGCCCTAGTGAAGGAGCAACGTGCCCGCATTTACATCCTGCGCCGCTGCGCCACCATGCTTCTCTGCTGGTACATTCAAGGAGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

53

Amino Acids

6.23

Weight (kDa)

9.96

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 28 - 46 6.2e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17235 AT1G53708 AT3G14362
malus_domestica MD09G1171200.v1.1
prunus_persica Prupe.3G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148241
rosa_rugosa Rorug02G0405000
rosa_samantha Rh2AG463500 Rh2BG476600 Rh2CG450300 Rh2DG485300
rosa_wichuraiana Rw2G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 115
AcuI CTGAAG 1 cut(s) 40
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 3 cut(s) 14, 20, 149
ApeKI GCWGC 2 cut(s) 71, 117
AspLEI GCGC 2 cut(s) 114, 122
BaeGI GKGCMC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 58, 104
BfaI CTAG 2 cut(s) 77, 160
BisI GCNGC 3 cut(s) 72, 115, 118
BlsI GCNGC 3 cut(s) 73, 116, 119
BpiI GAAGAC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 10, 105
BseLI CCNNNNNNNGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 2 cut(s) 58, 104
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 2 cut(s) 97, 115
BstC8I GCNNGC 2 cut(s) 47, 97
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 10, 105
BstHHI GCGC 2 cut(s) 114, 122
BstMWI GCNNNNNNNGC 2 cut(s) 51, 60
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 58, 104
BstV2I GAAGAC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 10, 105
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 64
Cac8I GCNNGC 2 cut(s) 47, 97
CfoI GCGC 2 cut(s) 114, 122
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 127
CviJI RGCY 1 cut(s) 54
CviKI_1 RGCY 1 cut(s) 54
CviQI GTAC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 80
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 72, 115, 118
FokI GGATG 2 cut(s) 17, 92
Fsp4HI GCNGC 3 cut(s) 72, 115, 118
FspBI CTAG 2 cut(s) 77, 160
GlaI GCGC 2 cut(s) 113, 121
GluI GCNGC 3 cut(s) 72, 115, 118
HhaI GCGC 2 cut(s) 114, 122
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 112, 120
HinP1I GCGC 2 cut(s) 112, 120
HpyAV CCTTC 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 60
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 112, 120
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 31, 122, 124
Lsp1109I GCAGC 2 cut(s) 58, 104
MaeI CTAG 2 cut(s) 77, 160
MaeII ACGT 1 cut(s) 91
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 51, 60
NlaIII CATG 1 cut(s) 130
PkrI GCNGC 3 cut(s) 73, 116, 119
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 3 cut(s) 72, 115, 118
SduI GDGCHC 1 cut(s) 97
SetI ASST 1 cut(s) 94
SsiI CCGC 2 cut(s) 97, 115
SspMI CTAG 2 cut(s) 77, 160
TaiI ACGT 1 cut(s) 94
TauI GCSGC 1 cut(s) 117
TscAI CASTG 2 cut(s) 29, 64
TseI GCWGC 2 cut(s) 71, 117
TspRI CASTG 2 cut(s) 29, 64
XagI CCTNNNNNAGG 1 cut(s) 80
XspI CTAG 2 cut(s) 77, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.