Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022256

Physical Location & Seq

Genomic Coordinates Reverse (-)

69787860 .. 69789623

Gene Structure 1764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACCGTTCCATGGAATTGGAAGTTGAGGATCGTCTGAAGGAGCTCCGCATTACAGCTATGAGGTCAGTGTCGAAGAAGGCTGCCGCCAACAATTTGAAAAGCTTCAACAAGATACGAATGGGTCTGGAGGCGTCTTGGATGAGGGAGAAGACGGAGTTCATTGAAGAACACAACAAGGTTCTGAGCTTGCTCAGAACCAATTTACCTCGCACCTCTTCTAGTGGTCCGGTTTTGACCGGTCACAAACAGAAGAAAGCATTAGCTTATGCTGAGGTGGTGAAGAAATTGAACCACGCGAGGCTCAATGCACTGCGGTTCAATCCGGCGACGGCTTTTAGGGATTCCTACACGAGCTTATCCGTTAGAGAATCCACAGGAAAAATTAGCATTCGCGAAATCTGGGATTTAGTCCGGATGCTGGCAGGTGAGGATATCATACACCATAGCCGTAAACACCGAAGCATTTCAAATGAAATGTCATTGGTACTTGGTGCAAAGCGCTACCTGGAATGGAGGCATGTGAAATACATCATGAGCAGAATCTCAGAGGATCCTGTACTGGCTGCCCTGGGAGGGGAGGTTGTAAACTTGAAACAAATCCGCGCATTCCTCAGGGTGCATTTAAAAGATTATGGAGTTCTAGATTTTGATGCAGGTCATGATGCTTGTAGTCCGCCTCCTGTCGATACCACTTGGCAGCAGATTTACTTTTGCATGAGAGCTGGGTATTATGATGAAGCAAGAACCGTTGCTTCATCATCAAATGCTTCACAGGAGTTTGCGCCTCTGGTAAAGTCTTTTCATATGCCTATAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

273

Amino Acids

31.16

Weight (kDa)

9.65

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nic96	PF04097	131 - 267	3.7e-21	Nup93/Nic96

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022256)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38800
rosa_chinensis	RchiOBHm_Chr2g0152371 RchiOBHm_Chr2g0152381
rosa_rugosa	Rorug02G0432600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	2 cut(s)	416, 647
AccII	CGCG	3 cut(s)	299, 396, 606
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	5 cut(s)	49, 87, 316, 604, 677
AclWI	GGATC	3 cut(s)	39, 548, 561
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	489, 561
AfeI	AGCGCT	1 cut(s)	503
AfiI	CCNNNNNNNGG	4 cut(s)	13, 421, 576, 577
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	7 cut(s)	100, 109, 167, 292, 322, 471, 595
AjnI	CCWGG	2 cut(s)	507, 570
AluBI	AGCT	7 cut(s)	46, 59, 105, 189, 266, 357, 725
AluI	AGCT	7 cut(s)	46, 59, 105, 189, 266, 357, 725
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	39, 548, 561
Aor13HI	TCCGGA	1 cut(s)	414
Aor51HI	AGCGCT	1 cut(s)	503
ApeKI	GCWGC	3 cut(s)	83, 566, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AsiGI	ACCGGT	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	104, 466
AspLEI	GCGC	3 cut(s)	504, 608, 787
AspS9I	GGNCC	2 cut(s)	4, 227
AsuHPI	GGTGA	2 cut(s)	292, 440
AvaII	GGWCC	2 cut(s)	4, 227
AxyI	CCTNAGG	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	70, 553, 712
BceAI	ACGGC	2 cut(s)	348, 435
BciT130I	CCWGG	2 cut(s)	509, 572
BfaI	CTAG	2 cut(s)	222, 644
BfoI	RGCGCY	1 cut(s)	505
BfuAI	ACCTGC	2 cut(s)	416, 647
BisI	GCNGC	4 cut(s)	84, 87, 567, 701
BlsI	GCNGC	4 cut(s)	85, 88, 568, 702
Bme1390I	CCNGG	2 cut(s)	509, 572
Bme18I	GGWCC	2 cut(s)	4, 227
BmgT120I	GGNCC	2 cut(s)	4, 227
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	2 cut(s)	509, 572
BmsI	GCATC	3 cut(s)	408, 643, 655
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	12, 570, 571
BsaWI	WCCGGW	3 cut(s)	229, 239, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 421, 576, 577
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	509, 572
BseDI	CCNNGG	3 cut(s)	12, 570, 571
BseGI	GGATG	2 cut(s)	147, 423
BseLI	CCNNNNNNNGG	4 cut(s)	13, 421, 576, 577
BseMII	CTCAG	5 cut(s)	176, 208, 264, 561, 628
BseNI	ACTGG	1 cut(s)	567
BseXI	GCAGC	3 cut(s)	70, 553, 712
BseYI	CCCAGC	1 cut(s)	725
Bsh1236I	CGCG	3 cut(s)	299, 396, 606
BshTI	ACCGGT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	4 cut(s)	230, 240, 326, 415
BslI	CCNNNNNNNGG	4 cut(s)	13, 421, 576, 577
BsmI	GAATGC	2 cut(s)	390, 608
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	31, 553
Bsp19I	CCATGG	1 cut(s)	12
Bsp68I	TCGCGA	1 cut(s)	396
BspACI	CCGC	5 cut(s)	49, 87, 316, 604, 677
BspCNI	CTCAG	5 cut(s)	177, 207, 265, 560, 627
BspEI	TCCGGA	1 cut(s)	414
BspFNI	CGCG	3 cut(s)	299, 396, 606
BspHI	TCATGA	2 cut(s)	534, 661
BspLI	GGNNCC	1 cut(s)	555
BspMI	ACCTGC	2 cut(s)	416, 647
BspPI	GGATC	3 cut(s)	39, 548, 561
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	567
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	12, 570, 571
BssMI	GATC	2 cut(s)	31, 553
BssNI	GRCGYC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	509, 572
Bst4CI	ACNGT	2 cut(s)	8, 751
Bst6I	CTCTTC	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	191, 423
BstDEI	CTNAG	5 cut(s)	185, 194, 273, 547, 614
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	147, 423
BstFNI	CGCG	3 cut(s)	299, 396, 606
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	3 cut(s)	504, 608, 787
BstKTI	GATC	2 cut(s)	34, 556
BstMBI	GATC	2 cut(s)	31, 553
BstNI	CCWGG	2 cut(s)	509, 572
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	507, 570
BstUI	CGCG	3 cut(s)	299, 396, 606
BstV1I	GCAGC	3 cut(s)	70, 553, 712
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	553
Bsu36I	CCTNAGG	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	147, 423
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	75, 311
BtuMI	TCGCGA	1 cut(s)	396
BveI	ACCTGC	2 cut(s)	416, 647
Cac8I	GCNNGC	2 cut(s)	191, 423
CciI	TCATGA	2 cut(s)	534, 661
CfoI	GCGC	3 cut(s)	504, 608, 787
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	4, 227
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	488, 560
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	5 cut(s)	13, 521, 535, 662, 718
CviQI	GTAC	2 cut(s)	488, 560
DdeI	CTNAG	5 cut(s)	185, 194, 273, 547, 614
DpnI	GATC	2 cut(s)	33, 555
DpnII	GATC	2 cut(s)	31, 553
DraI	TTTAAA	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	666
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	2 cut(s)	4, 227
Eco47III	AGCGCT	1 cut(s)	503
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	507, 570
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	5 cut(s)	16, 524, 538, 665, 721
FatI	CATG	5 cut(s)	12, 520, 534, 661, 717
FauNDI	CATATG	1 cut(s)	807
Fnu4HI	GCNGC	4 cut(s)	84, 87, 567, 701
FokI	GGATG	2 cut(s)	154, 430
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	4 cut(s)	84, 87, 567, 701
FspBI	CTAG	2 cut(s)	222, 644
GlaI	GCGC	3 cut(s)	503, 607, 786
GluI	GCNGC	4 cut(s)	84, 87, 567, 701
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	505
HapII	CCGG	4 cut(s)	230, 240, 326, 415
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	3 cut(s)	504, 608, 787
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	16, 524, 538, 665, 721
Hin6I	GCGC	3 cut(s)	502, 606, 785
HinP1I	GCGC	3 cut(s)	502, 606, 785
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	3 cut(s)	344, 371, 543
HpaII	CCGG	4 cut(s)	230, 240, 326, 415
HphI	GGTGA	2 cut(s)	292, 440
Hpy166II	GTNNAC	2 cut(s)	455, 589
Hpy188I	TCNGA	4 cut(s)	39, 186, 197, 550
Hpy188III	TCNNGA	6 cut(s)	128, 395, 415, 535, 644, 662
Hpy8I	GTNNAC	2 cut(s)	455, 589
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	34, 73
HpyCH4III	ACNGT	2 cut(s)	8, 751
HpyCH4V	TGCA	5 cut(s)	311, 497, 622, 656, 717
HpyF3I	CTNAG	5 cut(s)	185, 194, 273, 547, 614
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	16, 524, 538, 665, 721
HspAI	GCGC	3 cut(s)	502, 606, 785
Kpn2I	TCCGGA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	31, 553
LmnI	GCTCC	2 cut(s)	43, 51
Lsp1109I	GCAGC	3 cut(s)	70, 553, 712
LweI	GCATC	3 cut(s)	408, 643, 655
MaeI	CTAG	2 cut(s)	222, 644
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	33, 555
MboI	GATC	2 cut(s)	31, 553
MboII	GAAGA	6 cut(s)	88, 163, 179, 210, 265, 295
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	6 cut(s)	17, 94, 202, 287, 384, 816
MroI	TCCGGA	1 cut(s)	414
MroXI	GAANNNNTTC	2 cut(s)	104, 466
MseI	TTAA	1 cut(s)	626
MspI	CCGG	4 cut(s)	230, 240, 326, 415
MspR9I	CCNGG	2 cut(s)	509, 572
Mva1269I	GAATGC	2 cut(s)	390, 608
MvaI	CCWGG	2 cut(s)	509, 572
MvnI	CGCG	3 cut(s)	299, 396, 606
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	2 cut(s)	31, 553
NlaIII	CATG	5 cut(s)	16, 524, 538, 665, 721
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	242
NruI	TCGCGA	1 cut(s)	396
NspI	RCATGY	1 cut(s)	524
PagI	TCATGA	2 cut(s)	534, 661
PaqCI	CACCTGC	1 cut(s)	416
PasI	CCCWGGG	1 cut(s)	571
PctI	GAATGC	2 cut(s)	390, 608
PdmI	GAANNNNTTC	2 cut(s)	104, 466
PfeI	GAWTC	3 cut(s)	344, 371, 543
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	85, 88, 568, 702
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	507, 570
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	507, 570
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	4, 227
PsuI	RGATCY	1 cut(s)	553
RruI	TCGCGA	1 cut(s)	396
RsaI	GTAC	2 cut(s)	489, 561
RsaNI	GTAC	2 cut(s)	488, 560
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	4 cut(s)	84, 87, 567, 701
Sau3AI	GATC	2 cut(s)	31, 553
Sau96I	GGNCC	2 cut(s)	4, 227
ScrFI	CCNGG	2 cut(s)	509, 572
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	408, 643, 655
SinI	GGWCC	2 cut(s)	4, 227
Sse9I	AATT	6 cut(s)	17, 94, 202, 287, 384, 816
SsiI	CCGC	5 cut(s)	49, 87, 316, 604, 677
SspMI	CTAG	2 cut(s)	222, 644
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	507, 570
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	8, 751
TaqI	TCGA	2 cut(s)	74, 687
TasI	AATT	6 cut(s)	17, 94, 202, 287, 384, 816
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	344, 371, 543
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	2 cut(s)	75, 318
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	83, 566, 700
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	5 cut(s)	151, 489, 747, 753, 794
TspGWI	ACGGA	2 cut(s)	170, 352
TspRI	CASTG	2 cut(s)	75, 318
VpaK11BI	GGWCC	2 cut(s)	4, 227
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	104, 466
XspI	CTAG	2 cut(s)	222, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.