RchiOBHm_Chr2g0156911

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018464
Physical Location & Seq
Reverse (-)
73410874 .. 73411422
549 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGGCAATCGTGCTTATGATACTGGTTCCAATAGTACTTATGAATTTGCCTGATCAAACCCTAGAGTTTCAGATCAACTCTCTTTCAGTCTCTCCGTTTCTAGTCTTCTCCTCCTTCATCACTGCCAATTGGAACATCACTTTACTTGCTAGAAACCCTTACAAGGACAAGATCGTCTACTATGACGCAATTGAAGTTTCGGTTTTCTATCAAAAGCTGTTTCTAACTTCTTCGAAGATAGCTTTAAAGGAATCCTTGTATCAAAGTCCTAAGAACGAATCAATGCTGCAGGCGAATCTTGCAATCTCCTCAGTGTATGTTGGGGATTGGATGGAGGCAGCGGCCATGCTCGAGGAGTGGAGAAACAAAGTTGTGGGGTTCGGCGTCAGAGCAGATGCTCTTGTCAGGTTAGGCGACAGTGACAAGGATTTGGAGAGGAAGCTGGTGAGGGCCAACTGTGATTATTTGAAGGTTGAGATTTCACCGAATCAAACGGCGGGAGTCTTGTTGGGTGGATCAAGAAACTGTGATGTCATAGAAGTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

182

Amino Acids

20.47

Weight (kDa)

5.04

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018464)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41370
rosa_chinensis RchiOBHm_Chr2g0156911
rosa_laevigata RLG00000020952
rosa_multiflora Rmu_ssc0000408.1_g000003
rosa_roxburghii Rroxscaffold_2G00092590
rosa_rugosa Rorug02G0457100
rosa_samantha Rh2AG522800 Rh2BG536100 Rh2CG507700 Rh2DG545100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 341, 497
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 2 cut(s) 36, 545
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 194, 469
AluBI AGCT 3 cut(s) 217, 242, 442
AluI AGCT 3 cut(s) 217, 242, 442
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 2 cut(s) 342, 450
ApeKI GCWGC 2 cut(s) 286, 338
ApoI RAATTY 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 457, 474
AsuII TTCGAA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 273, 350
BccI CCATC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 510
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 4 cut(s) 62, 101, 150, 547
BfmI CTRYAG 1 cut(s) 287
BisI GCNGC 3 cut(s) 287, 339, 342
BlsI GCNGC 3 cut(s) 288, 340, 343
BmcAI AGTACT 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 3 cut(s) 100, 298, 368
BseXI GCAGC 2 cut(s) 273, 350
BshFI GGCC 2 cut(s) 344, 452
BsiHKCI CYCGRG 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 344, 452
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 52, 72, 171, 515
BspACI CCGC 2 cut(s) 341, 497
BspANI GGCC 2 cut(s) 344, 452
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 291
BspPI GGATC 1 cut(s) 523
BspT104I TTCGAA 1 cut(s) 233
BsrI ACTGG 1 cut(s) 27
BssMI GATC 4 cut(s) 52, 72, 171, 515
BssNI GRCGYC 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 419, 458, 527
BstACI GRCGYC 1 cut(s) 384
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 270, 310
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 4 cut(s) 55, 75, 174, 518
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 52, 72, 171, 515
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 273, 350
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 344, 452
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 120, 318, 424
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 2 cut(s) 194, 373
Csp6I GTAC 2 cut(s) 35, 544
CviAII CATG 1 cut(s) 346
CviJI RGCY 5 cut(s) 217, 242, 344, 442, 452
CviKI_1 RGCY 5 cut(s) 217, 242, 344, 442, 452
CviQI GTAC 2 cut(s) 35, 544
DdeI CTNAG 2 cut(s) 270, 310
DpnI GATC 4 cut(s) 54, 74, 173, 517
DpnII GATC 4 cut(s) 52, 72, 171, 515
DraI TTTAAA 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 350
FaeI CATG 1 cut(s) 349
FaiI YATR 6 cut(s) 17, 41, 183, 318, 347, 536
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 490
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 287, 339, 342
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 3 cut(s) 287, 339, 342
FspBI CTAG 4 cut(s) 62, 101, 150, 547
GluI GCNGC 3 cut(s) 287, 339, 342
HaeIII GGCC 2 cut(s) 344, 452
HgaI GACGC 2 cut(s) 194, 373
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 1 cut(s) 349
HinfI GANTC 5 cut(s) 251, 278, 295, 487, 501
HphI GGTGA 2 cut(s) 457, 474
Hpy166II GTNNAC 2 cut(s) 178, 544
Hpy188I TCNGA 2 cut(s) 72, 389
Hpy188III TCNNGA 1 cut(s) 519
Hpy8I GTNNAC 2 cut(s) 178, 544
HpyAV CCTTC 2 cut(s) 124, 463
HpyCH4III ACNGT 3 cut(s) 419, 458, 527
HpyCH4V TGCA 2 cut(s) 289, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 270, 310
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 4 cut(s) 52, 72, 171, 515
LpnPI CCDG 5 cut(s) 8, 63, 275, 391, 428
Lsp1109I GCAGC 2 cut(s) 273, 350
LweI GCATC 1 cut(s) 385
MaeI CTAG 4 cut(s) 62, 101, 150, 547
MaeIII GTNAC 1 cut(s) 419
MalI GATC 4 cut(s) 54, 74, 173, 517
MboI GATC 4 cut(s) 52, 72, 171, 515
MboII GAAGA 3 cut(s) 97, 222, 247
MfeI CAATTG 2 cut(s) 127, 189
MluCI AATT 3 cut(s) 43, 127, 189
MlyI GAGTC 1 cut(s) 510
MnlI CCTC 6 cut(s) 121, 319, 328, 346, 429, 441
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 341
MunI CAATTG 2 cut(s) 127, 189
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 4 cut(s) 52, 72, 171, 515
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 419
NspV TTCGAA 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 350
PfeI GAWTC 4 cut(s) 251, 278, 295, 487
PkrI GCNGC 3 cut(s) 288, 340, 343
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 350
PstI CTGCAG 1 cut(s) 291
RsaI GTAC 2 cut(s) 36, 545
RsaNI GTAC 2 cut(s) 35, 544
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 3 cut(s) 287, 339, 342
Sau3AI GATC 4 cut(s) 52, 72, 171, 515
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 1 cut(s) 510
SetI ASST 5 cut(s) 219, 244, 410, 444, 474
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 287
Sfr274I CTCGAG 1 cut(s) 350
SfuI TTCGAA 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 43, 127, 189
SsiI CCGC 2 cut(s) 341, 497
SspMI CTAG 4 cut(s) 62, 101, 150, 547
TaaI ACNGT 3 cut(s) 419, 458, 527
TaqI TCGA 2 cut(s) 233, 351
TasI AATT 3 cut(s) 43, 127, 189
TatI WGTACW 2 cut(s) 34, 543
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 4 cut(s) 251, 278, 295, 487
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 3 cut(s) 127, 318, 424
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 2 cut(s) 286, 338
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 2 cut(s) 56, 106
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 127, 318, 424
XapI RAATTY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 4 cut(s) 62, 101, 150, 547
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.