RchiOBHm_Chr2g0158481

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
74744602 .. 74745269
668 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGAATCGTTTTCGTGAGCTTTGCGTTCTCTTTACTCTTCTGATTCTGTTGTTTGCTCCGAGTAGTAGTCATGGCACTCTGATCACCGGCTTTCCCAGCCCTTCTTCATCATTAGCTAGAAGAAGAAGAACCCAACAGCAACGAGTTTTTCATTTCCGGCCAGCAGTTACCAGTGGTCCTTCTAAACCCAAAGAGAACTACTACGAATCCGAGAAGCGAAAGGTTCCCACAGGATCCAACCCCTTACACAACAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.86

Weight (kDa)

11.46

Isoelectric Point (pI)

78.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05065
prunus_persica Prupe.3G212800_v2.0.a1
pyrus_communis pycom09g03650
rosa_chinensis RchiOBHm_Chr2g0158481

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 228, 241
AcoI YGGCCR 1 cut(s) 158
AluBI AGCT 2 cut(s) 19, 116
AluI AGCT 2 cut(s) 19, 116
AlwI GGATC 2 cut(s) 228, 241
AoxI GGCC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 233
BclI TGATCA 1 cut(s) 81
BfaI CTAG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 225, 235
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 87, 157
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 81, 233
BspANI GGCC 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 225, 235
BspPI GGATC 2 cut(s) 228, 241
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 2 cut(s) 81, 233
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 84, 236
BstMBI GATC 2 cut(s) 81, 233
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 1 cut(s) 71
CviJI RGCY 5 cut(s) 19, 90, 99, 116, 160
CviKI_1 RGCY 5 cut(s) 19, 90, 99, 116, 160
DpnI GATC 2 cut(s) 83, 235
DpnII GATC 2 cut(s) 81, 233
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 176
FaeI CATG 1 cut(s) 74
FaiI YATR 1 cut(s) 72
FatI CATG 1 cut(s) 70
FbaI TGATCA 1 cut(s) 81
FspBI CTAG 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 87, 157
Hin1II CATG 1 cut(s) 74
HinfI GANTC 3 cut(s) 4, 43, 206
HpaII CCGG 2 cut(s) 87, 157
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 42, 60, 81, 211
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 111, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 81, 233
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 100, 109, 170, 174, 184, 216
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 83, 235
MboI GATC 2 cut(s) 81, 233
MboII GAAGA 5 cut(s) 29, 96, 132, 135, 138
MflI RGATCY 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 261
MspI CCGG 2 cut(s) 87, 157
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 2 cut(s) 81, 233
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 225, 235
PfeI GAWTC 3 cut(s) 4, 43, 206
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 225, 235
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 233
Sau3AI GATC 2 cut(s) 81, 233
Sau96I GGNCC 1 cut(s) 176
SetI ASST 3 cut(s) 21, 118, 225
SinI GGWCC 1 cut(s) 176
SspMI CTAG 1 cut(s) 117
TfiI GAWTC 3 cut(s) 4, 43, 206
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 17, 96, 140
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.