RchiOBHm_Chr1g0313771

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024788
Physical Location & Seq
Reverse (-)
903433 .. 903876
444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGCAAACCATTGACTCCCTTCTCCCTCTGTCTCTCGGCCCCCACCACCTGCTTTTCTCTATTCTCTTATTCTTTTTAATCATTCTTCCACGATTTCATCTCTGCCCTCTTAGCAGCAACTATTTTTCTTCTCTCCTCCTCCTTCTTATTCACTTCTTCTTCGTATTCAACTATTTCAGTCTTATAGAGCCCAAGCAAGTAGCAGCCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGCGCCGAGATCTACCCGGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAAGTTTCTTGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

8.59

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 72 - 99 1.8e-09 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024788)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0313771 RchiOBHm_Chr6g0296381
rosa_samantha Rh6BG157300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 282
AciI CCGC 2 cut(s) 232, 280
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 262, 263
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 114, 203
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 257, 258
AvaI CYCGRG 1 cut(s) 256
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 126, 215
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 249
BisI GCNGC 3 cut(s) 115, 204, 232
BlsI GCNGC 3 cut(s) 116, 205, 233
Bme1390I CCNGG 2 cut(s) 257, 258
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 40, 244
BmrFI CCNGG 2 cut(s) 257, 258
BmsI GCATC 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 200, 276
BpuMI CCSGG 2 cut(s) 257, 258
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 207, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 263
BseDI CCNNGG 2 cut(s) 207, 256
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 262, 263
BseMII CTCAG 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 125, 128
BseXI GCAGC 2 cut(s) 126, 215
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 262, 263
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 2 cut(s) 232, 280
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 40, 244
BspMI ACCTGC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 207, 256
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 110, 222
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 111, 240
BstSCI CCNGG 2 cut(s) 255, 256
BstV1I GCAGC 2 cut(s) 126, 215
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 256
CviAII CATG 1 cut(s) 208
CviJI RGCY 4 cut(s) 39, 190, 206, 226
CviKI_1 RGCY 4 cut(s) 39, 190, 206, 226
DdeI CTNAG 2 cut(s) 110, 222
DinI GGCGCC 1 cut(s) 244
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 185, 209
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 115, 204, 232
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 115, 204, 232
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 115, 204, 232
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 14, 273, 287
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 272, 286
Hpy188III TCNNGA 2 cut(s) 217, 306
HpyAV CCTTC 2 cut(s) 29, 152
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 240
HpyF3I CTNAG 2 cut(s) 110, 222
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 2 cut(s) 62, 270
Lsp1109I GCAGC 2 cut(s) 126, 215
LweI GCATC 1 cut(s) 276
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 282
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 77, 120, 148, 151
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 192
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 4 cut(s) 36, 117, 146, 149
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 257, 258
MwoI GCNNNNNNNGC 2 cut(s) 111, 240
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 2 cut(s) 257, 258
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 2 cut(s) 40, 244
NmeAIII GCCGAG 2 cut(s) 15, 271
PaqCI CACCTGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 273, 287
PkrI GCNGC 3 cut(s) 116, 205, 233
PleI GAGTC 1 cut(s) 8
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 40, 244
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 249
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 3 cut(s) 115, 204, 232
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 257, 258
SduI GDGCHC 1 cut(s) 192
SetI ASST 2 cut(s) 51, 228
SfaNI GCATC 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 215, 291
SmoI CTYRAG 2 cut(s) 215, 291
SsiI CCGC 2 cut(s) 232, 280
SspDI GGCGCC 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 255, 256
StyI CCWWGG 1 cut(s) 207
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 273, 287
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 244
TseI GCWGC 2 cut(s) 114, 203
TspDTI ATGAA 2 cut(s) 86, 265
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 1 cut(s) 244
XmaI CCCGGG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.