RchiOBHm_Chr1g0313771

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024788
Physical Location & Seq
Reverse (-)
903433 .. 903876
444 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54456

Sequence Viewer

Length: 309 bp
ATGCAAACCATTGACTCCCTTCTCCCTCTGTCTCTCGGCCCCCACCACCTGCTTTTCTCTATTCTCTTATTCTTTTTAATCATTCTTCCACGATTTCATCTCTGCCCTCTTAGCAGCAACTATTTTTCTTCTCTCCTCCTCCTTCTTATTCACTTCTTCTTCGTATTCAACTATTTCAGTCTTATAGAGCCCAAGCAAGTAGCAGCCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGCGCCGAGATCTACCCGGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAAGTTTCTTGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

8.59

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 72 - 99 1.8e-09 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024788)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0313771 RchiOBHm_Chr6g0296381
rosa_samantha Rh6BG157300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 282
AciI CCGC 2 cut(s) 232, 280
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 262, 263
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 114, 203
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 257, 258
AvaI CYCGRG 1 cut(s) 256
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 126, 215
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 249
BisI GCNGC 3 cut(s) 115, 204, 232
BlsI GCNGC 3 cut(s) 116, 205, 233
Bme1390I CCNGG 2 cut(s) 257, 258
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 40, 244
BmrFI CCNGG 2 cut(s) 257, 258
BmsI GCATC 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 200, 276
BpuMI CCSGG 2 cut(s) 257, 258
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 207, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 263
BseDI CCNNGG 2 cut(s) 207, 256
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 262, 263
BseMII CTCAG 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 125, 128
BseXI GCAGC 2 cut(s) 126, 215
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 262, 263
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 2 cut(s) 232, 280
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 40, 244
BspMI ACCTGC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 207, 256
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 110, 222
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 111, 240
BstSCI CCNGG 2 cut(s) 255, 256
BstV1I GCAGC 2 cut(s) 126, 215
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 256
CviAII CATG 1 cut(s) 208
CviJI RGCY 4 cut(s) 39, 190, 206, 226
CviKI_1 RGCY 4 cut(s) 39, 190, 206, 226
DdeI CTNAG 2 cut(s) 110, 222
DinI GGCGCC 1 cut(s) 244
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 185, 209
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 115, 204, 232
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 115, 204, 232
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 115, 204, 232
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 14, 273, 287
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 272, 286
Hpy188III TCNNGA 2 cut(s) 217, 306
HpyAV CCTTC 2 cut(s) 29, 152
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 240
HpyF3I CTNAG 2 cut(s) 110, 222
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 2 cut(s) 62, 270
Lsp1109I GCAGC 2 cut(s) 126, 215
LweI GCATC 1 cut(s) 276
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 282
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 77, 120, 148, 151
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 192
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 4 cut(s) 36, 117, 146, 149
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 257, 258
MwoI GCNNNNNNNGC 2 cut(s) 111, 240
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 2 cut(s) 257, 258
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 2 cut(s) 40, 244
NmeAIII GCCGAG 2 cut(s) 15, 271
PaqCI CACCTGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 273, 287
PkrI GCNGC 3 cut(s) 116, 205, 233
PleI GAGTC 1 cut(s) 8
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 40, 244
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 249
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 3 cut(s) 115, 204, 232
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 257, 258
SduI GDGCHC 1 cut(s) 192
SetI ASST 2 cut(s) 51, 228
SfaNI GCATC 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 215, 291
SmoI CTYRAG 2 cut(s) 215, 291
SsiI CCGC 2 cut(s) 232, 280
SspDI GGCGCC 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 255, 256
StyI CCWWGG 1 cut(s) 207
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 273, 287
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 244
TseI GCWGC 2 cut(s) 114, 203
TspDTI ATGAA 2 cut(s) 86, 265
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 1 cut(s) 244
XmaI CCCGGG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.