Rh6BG157300

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0024788
Physical Location & Seq
Reverse (-)
25519053 .. 25520109
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG157300.1

Sequence Viewer

Length: 369 bp
ATGCAAACCACTGACTCCCATCTCCCTCTGTCTCTCGGCCCCCACCACCTTCTTTCTCTATTCTCTTATTCTTTTTTAATCATTCTTCCACGGTTTCACCTATTTAGCAGCAACTATTCTTCTTCTCTCCTCCTCCTTCTTATTCACTTCTTCTTCGTATTCAACTATTTCAGTCTTATAGAGCCCAAGCAAGCAGCAGCCATGGTTCTCAAGACTGAGCTTTGCCGCTTTAGTGGCGTCGAGATCTACCCGGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAGGTTAAACACCAAAGCCTAACTACACCTCTCTCTCTCTCTCTCTCTCTGATCGATTTCTATACTCATCGGCTTCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

122

Amino Acids

14.1

Weight (kDa)

9.3

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 70 - 97 5.5e-09 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024788)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0313771 RchiOBHm_Chr6g0296381
rosa_samantha Rh6BG157300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 2 cut(s) 226, 274
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 256, 257
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 108, 194, 197
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 251, 252
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 250
BanII GRGCYC 1 cut(s) 186
BbvI GCAGC 3 cut(s) 120, 206, 209
BccI CCATC 1 cut(s) 27
BcnI CCSGG 2 cut(s) 251, 252
BcoDI GTCTC 1 cut(s) 36
BglII AGATCT 1 cut(s) 243
BisI GCNGC 4 cut(s) 109, 195, 198, 226
BlsI GCNGC 4 cut(s) 110, 196, 199, 227
Bme1390I CCNGG 2 cut(s) 251, 252
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 251, 252
BmsI GCATC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 2 cut(s) 251, 252
Bsa29I ATCGAT 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 89, 201, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 257
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 89, 201, 250
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 256, 257
BseMII CTCAG 2 cut(s) 207, 299
BseRI GAGGAG 2 cut(s) 119, 122
BseXI GCAGC 3 cut(s) 120, 206, 209
BshFI GGCC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 256, 257
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 243, 336
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 226, 274
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 208, 298
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 89, 201, 250
BssMI GATC 2 cut(s) 243, 336
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 216, 285
BstDSI CCRYGG 2 cut(s) 89, 201
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 2 cut(s) 246, 339
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 243, 336
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 249, 250
BstV1I GCAGC 3 cut(s) 120, 206, 209
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 89, 201
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 226
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 39, 184, 200, 220, 303, 358
CviKI_1 RGCY 6 cut(s) 39, 184, 200, 220, 303, 358
DdeI CTNAG 2 cut(s) 216, 285
DpnI GATC 2 cut(s) 245, 338
DpnII GATC 2 cut(s) 243, 336
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 179, 203, 348
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 109, 195, 198, 226
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 4 cut(s) 109, 195, 198, 226
GluI GCNGC 4 cut(s) 109, 195, 198, 226
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 205
HinfI GANTC 3 cut(s) 14, 267, 281
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 266, 280, 336
Hpy188III TCNNGA 2 cut(s) 211, 241
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 59, 146
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 216, 285
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 243, 336
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 2 cut(s) 264, 272
Lsp1109I GCAGC 3 cut(s) 120, 206, 209
LweI GCATC 1 cut(s) 270
MalI GATC 2 cut(s) 245, 338
MbiI CCGCTC 1 cut(s) 276
MboI GATC 2 cut(s) 243, 336
MboII GAAGA 5 cut(s) 77, 111, 114, 142, 145
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 4 cut(s) 36, 140, 143, 324
MseI TTAA 2 cut(s) 77, 291
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 251, 252
MwoI GCNNNNNNNGC 1 cut(s) 234
NciI CCSGG 2 cut(s) 251, 252
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 243, 336
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 15
PfeI GAWTC 2 cut(s) 267, 281
PkrI GCNGC 4 cut(s) 110, 196, 199, 227
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 243
SaqAI TTAA 2 cut(s) 77, 291
SatI GCNGC 4 cut(s) 109, 195, 198, 226
Sau3AI GATC 2 cut(s) 243, 336
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 251, 252
SduI GDGCHC 1 cut(s) 186
SetI ASST 5 cut(s) 51, 102, 222, 291, 316
SfaNI GCATC 1 cut(s) 270
SmaI CCCGGG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 2 cut(s) 226, 274
StyD4I CCNGG 2 cut(s) 249, 250
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 240, 339
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 2 cut(s) 267, 281
Tru1I TTAA 2 cut(s) 77, 291
Tru9I TTAA 2 cut(s) 77, 291
TscAI CASTG 1 cut(s) 16
TseI GCWGC 3 cut(s) 108, 194, 197
TspDTI ATGAA 2 cut(s) 259, 350
TspMI CCCGGG 1 cut(s) 250
TspRI CASTG 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.