RchiOBHm_Chr1g0317411

GTP1/OBG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0021301
Physical Location & Seq
Forward (+)
4997601 .. 4999793
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGATCCAAAAGTCTCATTTGAGTTCTCGTTCAAGACTTTCGTGTCATGCTGACCTCGGTATAGTATGGCAGATTGAAGACTTTGTGCAACTCCGTTTAATGTGTTTGGGAATTTCATATTCTCACCCAGTCATATCACCCTCCAGGATATCATCACTCCTCTTCTTTTTTATACCGCAGCTCCTTAAAAGCGGCTCAAAATTTTCAAGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACCTCTTTGCTGTAGGCCAAATTGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACAATGACTATATAGACGAGGAGATTAGCTTGGTAGAAATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

145

Amino Acids

16.46

Weight (kDa)

7.73

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021301)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0316661 RchiOBHm_Chr1g0317411
rosa_laevigata RLG00000019436
rosa_rugosa Rorug02G0321700
rosa_samantha Rh2CG358200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 2 cut(s) 176, 192
AcsI RAATTY 2 cut(s) 111, 200
AgsI TTSAA 3 cut(s) 33, 77, 207
AjnI CCWGG 2 cut(s) 143, 230
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 2 cut(s) 181, 342
AluI AGCT 2 cut(s) 181, 342
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 2 cut(s) 265, 421
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 2 cut(s) 111, 200
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 116, 129
BanI GGYRCC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 2 cut(s) 145, 232
BcoDI GTCTC 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 179, 193
BlsI GCNGC 2 cut(s) 180, 194
Bme1390I CCNGG 2 cut(s) 145, 232
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 145, 232
BmrI ACTGGG 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 55, 424
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 305
BseBI CCWGG 2 cut(s) 145, 232
BseDI CCNNGG 2 cut(s) 55, 424
BseGI GGATG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 149, 347
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 267, 423
BshNI GGYRCC 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 2 cut(s) 267, 423
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 176, 192
BspANI GGCC 2 cut(s) 267, 423
BspLI GGNNCC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 305
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 55, 424
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 145, 232
Bst6I CTCTTC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 2 cut(s) 145, 232
BstSCI CCNGG 2 cut(s) 143, 230
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 267, 423
BtsCI GGATG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 421
CviAII CATG 1 cut(s) 47
CviJI RGCY 8 cut(s) 181, 195, 230, 267, 298, 342, 383, 423
CviKI_1 RGCY 8 cut(s) 181, 195, 230, 267, 298, 342, 383, 423
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 424
Eco32I GATATC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 143, 230
EcoRV GATATC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 1 cut(s) 50
FaiI YATR 9 cut(s) 48, 62, 67, 118, 134, 173, 303, 324, 326
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 179, 193
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 179, 193
GluI GCNGC 2 cut(s) 179, 193
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 2 cut(s) 267, 423
Hin1II CATG 1 cut(s) 50
HinfI GANTC 1 cut(s) 235
HphI GGTGA 2 cut(s) 116, 129
Hpy188III TCNNGA 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 88, 305, 310
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 130, 141, 157, 217, 244, 280, 369
Lsp1109I GCAGC 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 89, 154
MluCI AATT 3 cut(s) 111, 200, 270
MnlI CCTC 5 cut(s) 65, 151, 170, 263, 325
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 2 cut(s) 98, 186
MslI CAYNNNNRTG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 145, 232
MvaI CCWGG 2 cut(s) 145, 232
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 395
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 2 cut(s) 180, 194
Psp6I CCWGG 2 cut(s) 143, 230
PspGI CCWGG 2 cut(s) 143, 230
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 98, 186
SatI GCNGC 2 cut(s) 179, 193
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 421
ScrFI CCNGG 2 cut(s) 145, 232
SetI ASST 5 cut(s) 57, 183, 225, 255, 344
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 3 cut(s) 111, 200, 270
SsiI CCGC 2 cut(s) 176, 192
SspI AATATT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 143, 230
StyI CCWWGG 1 cut(s) 424
TasI AATT 3 cut(s) 111, 200, 270
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 98, 186
Tru9I TTAA 2 cut(s) 98, 186
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 2 cut(s) 111, 200
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.