Rorug02G0321700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0021301
Physical Location & Seq
Forward (+)
39377354 .. 39378340
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0321700.1

Sequence Viewer

Length: 390 bp
ATGGGATCAATGTGTATGTACGTCAACCTTATATGGAGGTTAATTCCCAACTTGAGTCGAAGCATGAGAAGAAGAAACAAGATTTTGATTTCCGATTGCACCAACGAAAACCAGAAGCCGATTTCTACCGAGAAGACCAAATCACAGACAGACCAATACCGAGAGAAAGAGGTGTTCTGTGATGGAGATGCTATGGACATGGCTTTTTTGAGTATCTCCTTCATCTTAACTCTCTTATGCCTTGTGGGTTATCAGCTTTTGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.04

Weight (kDa)

5.77

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 71 - 129 5.8e-16 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021301)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0316661 RchiOBHm_Chr1g0317411
rosa_laevigata RLG00000019436
rosa_rugosa Rorug02G0321700
rosa_samantha Rh2CG358200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AbsI CCTCGAGG 1 cut(s) 275
AclWI GGATC 1 cut(s) 13
AfaI GTAC 2 cut(s) 20, 325
AgsI TTSAA 1 cut(s) 350
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 140
BccI CCATC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 5
BspPI GGATC 1 cut(s) 13
BssMI GATC 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 323, 328
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 1 cut(s) 5
BstV2I GAAGAC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 19, 324
CviAII CATG 2 cut(s) 64, 199
CviJI RGCY 3 cut(s) 118, 203, 256
CviKI_1 RGCY 3 cut(s) 118, 203, 256
CviQI GTAC 2 cut(s) 19, 324
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 275
FaeI CATG 2 cut(s) 67, 202
FatI CATG 2 cut(s) 63, 198
FauNDI CATATG 1 cut(s) 298
HgaI GACGC 1 cut(s) 352
Hin1II CATG 2 cut(s) 67, 202
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 55, 302
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 94, 315
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 323, 328
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 2 cut(s) 67, 202
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 125, 348
LweI GCATC 1 cut(s) 178
MaeII ACGT 1 cut(s) 21
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 3 cut(s) 81, 84, 145
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 4 cut(s) 30, 163, 271, 284
MseI TTAA 2 cut(s) 41, 227
NdeI CATATG 1 cut(s) 298
NdeII GATC 1 cut(s) 5
NlaIII CATG 2 cut(s) 67, 202
PaeR7I CTCGAG 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PfeI GAWTC 1 cut(s) 302
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PsiI TTATAA 1 cut(s) 377
PspPI GGNCC 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 275
RsaI GTAC 2 cut(s) 20, 325
RsaNI GTAC 2 cut(s) 19, 324
SaqAI TTAA 2 cut(s) 41, 227
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 64
SetI ASST 6 cut(s) 24, 30, 41, 174, 258, 276
SfaNI GCATC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 52, 275
SmoI CTYRAG 2 cut(s) 52, 275
Sse9I AATT 1 cut(s) 42
TaaI ACNGT 2 cut(s) 323, 328
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 58, 276
TasI AATT 1 cut(s) 42
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 2 cut(s) 41, 227
Tru9I TTAA 2 cut(s) 41, 227
TspDTI ATGAA 2 cut(s) 211, 294
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.