RLG00000019436

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0021301
Physical Location & Seq
Reverse (-)
51997791 .. 52000817
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019436

Sequence Viewer

Length: 348 bp
ATGAAAACCAAAGAGTACTCCAGAAGGATTAATGATAAATTAATTGTACAAAAAGATGGAGGTTTGGATTTGATCTTCCATCTGATTTCTTGGGCGCAGAAGAAATTGATTGCAATGAAACACTGGAACTGCAGAAATGATCCGAAAGTCTCATTTGAGTTCTCGTTGAAGACTTTCGTGTCATGCTTACCTCTGATATCATCACTCCTCTTCTTTTTTATACCGCAGCTCCTTAAAAGCGGCTCCAGATTTTCATGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACCTCTTTGCTGTAGGCCAAATTGAGGACAACTCAGAAGAGGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.37

Weight (kDa)

8.84

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021301)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0316661 RchiOBHm_Chr1g0317411
rosa_laevigata RLG00000019436
rosa_rugosa Rorug02G0321700
rosa_samantha Rh2CG358200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
AciI CCGC 2 cut(s) 224, 240
AclWI GGATC 1 cut(s) 134
AfaI GTAC 2 cut(s) 17, 48
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 226
AseI ATTAAT 2 cut(s) 30, 41
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 50, 87
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 2 cut(s) 130, 309
BisI GCNGC 2 cut(s) 227, 241
BlsI GCNGC 2 cut(s) 228, 242
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 2 cut(s) 4, 229
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 72, 139
BspACI CCGC 2 cut(s) 224, 240
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 46
BsrI ACTGG 1 cut(s) 128
BssMI GATC 2 cut(s) 72, 139
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 215, 330
BstAUI TGTACA 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 75, 142
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 72, 139
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 2 cut(s) 130, 309
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 16, 47
CviAII CATG 2 cut(s) 183, 255
CviJI RGCY 4 cut(s) 229, 243, 278, 315
CviKI_1 RGCY 4 cut(s) 229, 243, 278, 315
CviQI GTAC 2 cut(s) 16, 47
DdeI CTNAG 1 cut(s) 331
DpnI GATC 2 cut(s) 74, 141
DpnII GATC 2 cut(s) 72, 139
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 215, 330
EarI CTCTTC 2 cut(s) 215, 330
Eco32I GATATC 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 278
EcoRV GATATC 1 cut(s) 198
FaeI CATG 2 cut(s) 186, 258
FaiI YATR 3 cut(s) 184, 221, 256
FatI CATG 2 cut(s) 182, 254
Fnu4HI GCNGC 2 cut(s) 227, 241
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 227, 241
GlaI GCGC 1 cut(s) 96
GluI GCNGC 2 cut(s) 227, 241
GsuI CTGGAG 2 cut(s) 4, 229
HaeIII GGCC 1 cut(s) 315
HhaI GCGC 1 cut(s) 97
Hin1II CATG 2 cut(s) 186, 258
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 84, 144, 195, 334
Hpy188III TCNNGA 2 cut(s) 21, 246
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 113, 132
HpyF3I CTNAG 1 cut(s) 331
Hsp92II CATG 2 cut(s) 186, 258
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 72, 139
LmnI GCTCC 2 cut(s) 234, 248
LpnPI CCDG 5 cut(s) 34, 109, 259, 265, 292
Lsp1109I GCAGC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 74, 141
MboI GATC 2 cut(s) 72, 139
MboII GAAGA 5 cut(s) 67, 112, 181, 202, 347
MluCI AATT 4 cut(s) 38, 42, 104, 318
MnlI CCTC 6 cut(s) 53, 201, 218, 311, 316, 331
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 30, 41, 234
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
NdeII GATC 2 cut(s) 72, 139
NlaIII CATG 2 cut(s) 186, 258
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 2 cut(s) 228, 242
PshBI ATTAAT 2 cut(s) 30, 41
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 134
RsaI GTAC 2 cut(s) 17, 48
RsaNI GTAC 2 cut(s) 16, 47
SaqAI TTAA 3 cut(s) 30, 41, 234
SatI GCNGC 2 cut(s) 227, 241
Sau3AI GATC 2 cut(s) 72, 139
ScaI AGTACT 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 280
SetI ASST 5 cut(s) 64, 193, 231, 273, 303
SfcI CTRYAG 2 cut(s) 130, 309
Sse9I AATT 4 cut(s) 38, 42, 104, 318
SsiI CCGC 2 cut(s) 224, 240
SspI AATATT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 278
TasI AATT 4 cut(s) 38, 42, 104, 318
TatI WGTACW 2 cut(s) 15, 46
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 3 cut(s) 30, 41, 234
Tru9I TTAA 3 cut(s) 30, 41, 234
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 17, 131, 243
TspRI CASTG 1 cut(s) 128
VspI ATTAAT 2 cut(s) 30, 41
XmnI GAANNNNTTC 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.