RchiOBHm_Chr1g0316661

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
4162178 .. 4163617
1440 bp
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UTR
Exon/CDS
Intron
PRQ54706

Sequence Viewer

Length: 351 bp
ATGATCCAAAAGTCTCATTTGAGTTCTCGTTCAACACTTTCGTGTCATGCTGACCTCGGTATAGTATGGCAGATTGAAGACTTTGTGCAACTCCGTTTAATGTGTTTGGGAATTTCATATTCTCACCCAGTCATATCACCCTCCAGGATATCATCACTCCTCTTCTTTTTTATACCGCAGCTCCTTAAAAGCGGCTCCAGATTTTCAAGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACCTCTTTGCTGTAGGCCAAATTGAGGGGGAATGTGAAAGAATGCTAAATCTCTATTATGTGAAGTTTTATACACGATCTGATCTTGCTCTTCGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.26

Weight (kDa)

8.8

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021301)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0316661 RchiOBHm_Chr1g0317411
rosa_laevigata RLG00000019436
rosa_rugosa Rorug02G0321700
rosa_samantha Rh2CG358200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 176, 192
AcsI RAATTY 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 3 cut(s) 33, 77, 207
AjnI CCWGG 2 cut(s) 143, 230
AleI CACNNNNGTG 1 cut(s) 40
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 116, 129
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 2 cut(s) 145, 232
BcoDI GTCTC 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 179, 193
BlsI GCNGC 2 cut(s) 180, 194
Bme1390I CCNGG 2 cut(s) 145, 232
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 145, 232
BmrI ACTGGG 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 127, 181
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 145, 232
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 3, 326, 331
BspACI CCGC 2 cut(s) 176, 192
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 3, 326, 331
Bst2UI CCWGG 2 cut(s) 145, 232
Bst6I CTCTTC 2 cut(s) 167, 345
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 3 cut(s) 6, 329, 334
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 3, 326, 331
BstNI CCWGG 2 cut(s) 145, 232
BstSCI CCNGG 2 cut(s) 143, 230
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 251
CviAII CATG 1 cut(s) 47
CviJI RGCY 4 cut(s) 181, 195, 230, 267
CviKI_1 RGCY 4 cut(s) 181, 195, 230, 267
DpnI GATC 3 cut(s) 5, 328, 333
DpnII GATC 3 cut(s) 3, 326, 331
Eam1104I CTCTTC 2 cut(s) 167, 345
EarI CTCTTC 2 cut(s) 167, 345
Eco32I GATATC 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 143, 230
EcoRV GATATC 1 cut(s) 150
FaeI CATG 1 cut(s) 50
FaiI YATR 9 cut(s) 48, 62, 67, 118, 134, 173, 309, 321, 349
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 179, 193
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 179, 193
GluI GCNGC 2 cut(s) 179, 193
GsuI CTGGAG 2 cut(s) 127, 181
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 1 cut(s) 50
HinfI GANTC 1 cut(s) 235
HphI GGTGA 2 cut(s) 116, 129
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 88
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 3 cut(s) 3, 326, 331
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 186, 200
LpnPI CCDG 6 cut(s) 130, 141, 157, 211, 217, 244
Lsp1109I GCAGC 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 5, 328, 333
MboI GATC 3 cut(s) 3, 326, 331
MboII GAAGA 3 cut(s) 89, 154, 332
MluCI AATT 2 cut(s) 111, 270
MnlI CCTC 5 cut(s) 65, 151, 170, 263, 268
MseI TTAA 2 cut(s) 98, 186
MslI CAYNNNNRTG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 145, 232
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 2 cut(s) 145, 232
NdeII GATC 3 cut(s) 3, 326, 331
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 2 cut(s) 180, 194
Psp6I CCWGG 2 cut(s) 143, 230
PspGI CCWGG 2 cut(s) 143, 230
PspN4I GGNNCC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 98, 186
SatI GCNGC 2 cut(s) 179, 193
Sau3AI GATC 3 cut(s) 3, 326, 331
ScrFI CCNGG 2 cut(s) 145, 232
SetI ASST 4 cut(s) 57, 183, 225, 255
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 2 cut(s) 111, 270
SsiI CCGC 2 cut(s) 176, 192
SspI AATATT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 143, 230
TasI AATT 2 cut(s) 111, 270
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 98, 186
Tru9I TTAA 2 cut(s) 98, 186
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.