RchiOBHm_Chr1g0349171

Spindle and kinetochore-associated protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022599
Physical Location & Seq
Forward (+)
42234564 .. 42235225
662 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGCATGAAGCAGTAAAGGGAAAACACTTCTTTCTTGAAACTGACATGAAGGGACCATCCTTGAAGCTTGACAACACTAGAAAAGCAATACTAACTGTCCTTCGTCACCTTGGTCGTGTAAGTGAGACACGGATTGGTCATCGGGTGATCATTCTTTTGAAGCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SKA1

Protein Analysis

56

Amino Acids

6.44

Weight (kDa)

10.61

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKA1 PF07160 1 - 47 5.1e-19 Spindle and kinetochore-associated protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022599)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0349171
rosa_roxburghii Rroxscaffold_4G00306030
rosa_rugosa Rorug01G0201300
rosa_samantha Rh1AG218800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 38, 64, 160
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 98, 157
AvaII GGWCC 1 cut(s) 53
BccI CCATC 1 cut(s) 64
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 97
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 53
CviAII CATG 2 cut(s) 5, 46
CviJI RGCY 2 cut(s) 67, 163
CviKI_1 RGCY 2 cut(s) 67, 163
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 2 cut(s) 8, 49
FaiI YATR 2 cut(s) 6, 47
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 4, 45
FbaI TGATCA 1 cut(s) 147
FokI GGATG 1 cut(s) 43
FspBI CTAG 1 cut(s) 78
Hin1II CATG 2 cut(s) 8, 49
HindIII AAGCTT 1 cut(s) 65
HphI GGTGA 2 cut(s) 98, 157
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 43, 110
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 2 cut(s) 8, 49
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 6
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 8, 49
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 53
SetI ASST 2 cut(s) 69, 111
SinI GGWCC 1 cut(s) 53
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 97
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 21, 62
TspGWI ACGGA 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 53
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.