RchiOBHm_Chr1g0350871

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
44027740 .. 44030096
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
ATGGCCTCCTCCCGCTGCCACCTCCTCCTCCTCACTCTCCTCTCCCTCGCCGCCGCCATCTCCGCCCACAACATCACCGCCATTCTCGAAGCCAACCCCGAGTACAGCCAGTACAACTCCTTCTTAACCCAAACAAGACTAGCCGACGAGATCAACACCCGCACCACCGTCACCGTCCTCGTCCTCACCAATGGCGTCATGTCATCCCTCGCCGCCAAGCACCCCCTCTCCGTCATCAAGAACGCTCTCAGCCTCCACATCCTTCTCGACTACTACGACCCCGCCAAGCTCCACAAAATCTCCGACGGCTCCGTCCTCACCACCACCCTCTACCAGACCACCGGCCACGCCCCCGGCAACCTCGGCTTCGTCAACATCACCGATCTCTCCGGCGGCAAAGTCGGCTTCGGCTCCGCCGCCCCCGGATCCAAGCTCGACTCCAGCTACACTAAATCCGTCAAGCAGATTCCCTACAACATCTCCGTCCTCGAGATCTCCGCCCCGGTCATCGCCCCCGGCATCTTGACCGCTCCGGCCCCGTCGGCCTCGGATTTGAACATCACCGCGCTTCTAGAAAAAGCCGGGTGCAAAACCTTCGCTTCTTTAATCGTCTCCAGCGGGGTGCTCAAGACTTTCCAGACCACCGCCGATAAGGGATTGACTCTGTTTGTGCCGAACGACGAGGCGTTTAAGGCCAAGGGCGTGCCGGATCTGACCAAGCTCACCAATGCCGAGGTCGTTTCGCTCTTGCAGTACCACGCCGTCCCTAAATACACTCCCAAAGGTGCCCTCAAGACCACCAAGGATCCAATCAGCACTCTCGCCACCAATGGCGCCGGAAAGTACGACCTGACCGTCACCACCTCCGGTGACCAGGTCACACTCCACACCGGAGTCGTCTCCTCCAGAGTCGCCGACACTGTCCTCGACTCTACTCCGTTTTCAGTCTTCACTGTCGACAGTGTTCTTCTCCCAACTGAGCTCTTCGGCAAATCTCCATCGCCGGCGCCGTCGATGGAGCCGGTGGCTGCTCCTTCACCGACACCAGTCGTTGCTCCCAGCCCAGCTTCCGTAGAAGCGCCGTCGCCGTCGGCCGCTTCACCGCCGGCTCCTCCTTCCGAGACACCGGAGGGAGCTCCGTCGGATGCACCGTCGGCAGCGGCGGCGGACAGTACCTCGGCGAACGGAGCTGGTCACGTGACTTCACCTGCATTGTTGATGACAGTGCTCACCGTCGCCTCTGTGACTGTCATTTCCTTCGTTTTCTTGTCCTGA
Functional Annotation

Protein Analysis

424

Amino Acids

43.53

Weight (kDa)

5.97

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 195 - 325 1.8e-19 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45470 AT3G60900
fragaria_vesca FvH4_7g12120
malus_domestica MD02G1201100.v1.1
prunus_persica Prupe.2G147700_v2.0.a1
pyrus_communis pycom02g16450
rosa_chinensis RchiOBHm_Chr1g0350871
rosa_laevigata RLG00000028447
rosa_multiflora Rmu_co8189458.1_g000001 Rmu_co8311065.1_g000001
rosa_roxburghii Rroxscaffold_4G00304450
rosa_rugosa Rorug01G0214800
rosa_samantha Rh1AG229200 Rh1BG199200 Rh1CG214000 Rh1DG227100
rosa_wichuraiana Rw1G019860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1216
AasI GACNNNNNNGTC 2 cut(s) 311, 854
Acc36I ACCTGC 1 cut(s) 1216
AccB1I GGYRCC 3 cut(s) 785, 833, 1006
AccBSI CCGCTC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 957
AccII CGCG 1 cut(s) 566
AclWI GGATC 5 cut(s) 420, 433, 717, 800, 813
AcoI YGGCCR 2 cut(s) 343, 1092
AcvI CACGTG 1 cut(s) 1198
AcyI GRCGYC 3 cut(s) 195, 834, 1007
AfaI GTAC 5 cut(s) 104, 113, 755, 845, 1174
AgsI TTSAA 1 cut(s) 556
AjnI CCWGG 1 cut(s) 873
AluBI AGCT 8 cut(s) 289, 433, 444, 721, 982, 1067, 1136, 1190
AluI AGCT 8 cut(s) 289, 433, 444, 721, 982, 1067, 1136, 1190
Alw21I GWGCWC 4 cut(s) 627, 984, 1138, 1230
Alw26I GTCTC 3 cut(s) 616, 904, 1115
AlwI GGATC 5 cut(s) 420, 433, 717, 800, 813
Ama87I CYCGRG 2 cut(s) 98, 488
AoxI GGCC 6 cut(s) 3, 343, 534, 543, 693, 1092
ApeKI GCWGC 3 cut(s) 15, 1028, 1157
AspLEI GCGC 4 cut(s) 568, 836, 1009, 1081
AspS9I GGNCC 1 cut(s) 535
AsuC2I CCSGG 5 cut(s) 354, 423, 503, 516, 583
AvaI CYCGRG 2 cut(s) 98, 488
BaeGI GKGCMC 1 cut(s) 790
BamHI GGATCC 2 cut(s) 425, 805
BanI GGYRCC 3 cut(s) 785, 833, 1006
BanII GRGCYC 2 cut(s) 984, 1138
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 1198
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 4 cut(s) 627, 984, 1138, 1230
BbvI GCAGC 3 cut(s) 2, 1015, 1169
BccI CCATC 3 cut(s) 65, 1006, 1009
BceAI ACGGC 5 cut(s) 322, 746, 994, 1066, 1072
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 1 cut(s) 875
BcnI CCSGG 5 cut(s) 354, 423, 503, 516, 583
BcoDI GTCTC 3 cut(s) 616, 904, 1115
BfaI CTAG 2 cut(s) 140, 572
BfoI RGCGCY 3 cut(s) 837, 1010, 1082
BfuAI ACCTGC 1 cut(s) 1216
BglI GCCNNNNNGGC 1 cut(s) 542
BglII AGATCT 1 cut(s) 492
Bme1390I CCNGG 6 cut(s) 354, 423, 503, 516, 583, 875
BmeT110I CYCGRG 2 cut(s) 98, 488
BmgT120I GGNCC 1 cut(s) 535
BmrFI CCNGG 6 cut(s) 354, 423, 503, 516, 583, 875
BmsI GCATC 2 cut(s) 528, 1135
BoxI GACNNNNGTC 1 cut(s) 1046
BpiI GAAGAC 1 cut(s) 940
BpmI CTGGAG 3 cut(s) 424, 598, 889
BpuEI CTTGAG 2 cut(s) 611, 776
BpuMI CCSGG 5 cut(s) 354, 423, 503, 516, 583
BsaAI YACGTR 1 cut(s) 1198
BsaHI GRCGYC 3 cut(s) 195, 834, 1007
BsaWI WCCGGW 3 cut(s) 866, 890, 1126
BsaXI ACNNNNNCTCC 6 cut(s) 212, 242, 284, 314, 464, 494
Bse118I RCCGGY 4 cut(s) 341, 1003, 1021, 1105
Bse1I ACTGG 2 cut(s) 109, 1046
BseBI CCWGG 1 cut(s) 875
BseGI GGATG 3 cut(s) 203, 258, 1150
BseMII CTCAG 2 cut(s) 262, 969
BseNI ACTGG 2 cut(s) 109, 1046
BseRI GAGGAG 6 cut(s) 14, 17, 20, 29, 892, 1101
BseSI GKGCMC 1 cut(s) 790
BseX3I CGGCCG 1 cut(s) 1092
BseXI GCAGC 3 cut(s) 2, 1015, 1169
BseYI CCCAGC 2 cut(s) 1058, 1063
Bsh1236I CGCG 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 1095
BshFI GGCC 6 cut(s) 5, 345, 536, 545, 695, 1094
BshNI GGYRCC 3 cut(s) 785, 833, 1006
BsiEI CGRYCG 1 cut(s) 1095
BsiHKAI GWGCWC 4 cut(s) 627, 984, 1138, 1230
BsiHKCI CYCGRG 2 cut(s) 98, 488
BslFI GGGAC 1 cut(s) 749
BsmAI GTCTC 3 cut(s) 616, 904, 1115
BsmBI CGTCTC 2 cut(s) 616, 904
BsmFI GGGAC 1 cut(s) 749
BsnI GGCC 6 cut(s) 5, 345, 536, 545, 695, 1094
BsoBI CYCGRG 2 cut(s) 98, 488
Bsp1286I GDGCHC 5 cut(s) 627, 790, 984, 1138, 1230
Bsp143I GATC 6 cut(s) 150, 382, 425, 492, 709, 805
BspANI GGCC 6 cut(s) 5, 345, 536, 545, 695, 1094
BspCNI CTCAG 2 cut(s) 261, 970
BspFNI CGCG 1 cut(s) 566
BspMI ACCTGC 1 cut(s) 1216
BspPI GGATC 5 cut(s) 420, 433, 717, 800, 813
BspQI GCTCTTC 1 cut(s) 989
BspT107I GGYRCC 3 cut(s) 785, 833, 1006
BsrBI CCGCTC 1 cut(s) 530
BsrFI RCCGGY 4 cut(s) 341, 1003, 1021, 1105
BsrI ACTGG 2 cut(s) 109, 1046
BssAI RCCGGY 4 cut(s) 341, 1003, 1021, 1105
BssMI GATC 6 cut(s) 150, 382, 425, 492, 709, 805
BssNI GRCGYC 3 cut(s) 195, 834, 1007
BssT1I CCWWGG 2 cut(s) 696, 801
Bst2UI CCWGG 1 cut(s) 875
Bst6I CTCTTC 1 cut(s) 989
BstACI GRCGYC 3 cut(s) 195, 834, 1007
BstBAI YACGTR 1 cut(s) 1198
BstC8I GCNNGC 3 cut(s) 704, 1005, 1107
BstDEI CTNAG 2 cut(s) 248, 978
BstEII GGTNACC 1 cut(s) 869
BstF5I GGATG 3 cut(s) 203, 258, 1150
BstFNI CGCG 1 cut(s) 566
BstH2I RGCGCY 3 cut(s) 837, 1010, 1082
BstHHI GCGC 4 cut(s) 568, 836, 1009, 1081
BstKTI GATC 6 cut(s) 153, 385, 428, 495, 712, 808
BstMAI GTCTC 3 cut(s) 616, 904, 1115
BstMBI GATC 6 cut(s) 150, 382, 425, 492, 709, 805
BstMCI CGRYCG 1 cut(s) 1095
BstMWI GCNNNNNNNGC 8 cut(s) 62, 363, 402, 542, 692, 1154, 1163, 1187
BstNI CCWGG 1 cut(s) 875
BstPAI GACNNNNGTC 1 cut(s) 1046
BstPI GGTNACC 1 cut(s) 869
BstSCI CCNGG 6 cut(s) 352, 421, 501, 514, 581, 873
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 2, 1015, 1169
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 4 cut(s) 425, 492, 709, 805
BstYI RGATCY 4 cut(s) 425, 492, 709, 805
BstZI CGGCCG 1 cut(s) 1092
BsuRI GGCC 6 cut(s) 5, 345, 536, 545, 695, 1094
BtgZI GCGATG 2 cut(s) 493, 984
BtsCI GGATG 3 cut(s) 203, 258, 1150
BtsIMutI CAGTG 4 cut(s) 918, 951, 967, 1230
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 3 cut(s) 704, 1005, 1107
CfoI GCGC 4 cut(s) 568, 836, 1009, 1081
Cfr10I RCCGGY 4 cut(s) 341, 1003, 1021, 1105
Cfr13I GGNCC 1 cut(s) 535
CseI GACGC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 873
Csp6I GTAC 5 cut(s) 103, 112, 754, 844, 1173
CviAII CATG 1 cut(s) 199
CviQI GTAC 5 cut(s) 103, 112, 754, 844, 1173
DdeI CTNAG 2 cut(s) 248, 978
DinI GGCGCC 2 cut(s) 835, 1008
DpnI GATC 6 cut(s) 152, 384, 427, 494, 711, 807
DpnII GATC 6 cut(s) 150, 382, 425, 492, 709, 805
DrdI GACNNNNNNGTC 2 cut(s) 311, 854
DseDI GACNNNNNNGTC 2 cut(s) 311, 854
EaeI YGGCCR 2 cut(s) 343, 1092
EagI CGGCCG 1 cut(s) 1092
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
EciI GGCGGA 4 cut(s) 52, 403, 487, 1181
Ecl136II GAGCTC 2 cut(s) 982, 1136
EclXI CGGCCG 1 cut(s) 1092
Eco130I CCWWGG 2 cut(s) 696, 801
Eco24I GRGCYC 2 cut(s) 984, 1138
Eco52I CGGCCG 1 cut(s) 1092
Eco53kI GAGCTC 2 cut(s) 982, 1136
Eco72I CACGTG 1 cut(s) 1198
Eco88I CYCGRG 2 cut(s) 98, 488
Eco91I GGTNACC 1 cut(s) 869
EcoICRI GAGCTC 2 cut(s) 982, 1136
EcoO65I GGTNACC 1 cut(s) 869
EcoRII CCWGG 1 cut(s) 873
EcoT14I CCWWGG 2 cut(s) 696, 801
EcoT38I GRGCYC 2 cut(s) 984, 1138
EgeI GGCGCC 2 cut(s) 835, 1008
EheI GGCGCC 2 cut(s) 835, 1008
ErhI CCWWGG 2 cut(s) 696, 801
Esp3I CGTCTC 2 cut(s) 616, 904
FaeI CATG 1 cut(s) 202
FaiI YATR 1 cut(s) 200
FaqI GGGAC 1 cut(s) 749
FatI CATG 1 cut(s) 198
FauI CCCGC 4 cut(s) 20, 167, 289, 611
FblI GTMKAC 1 cut(s) 957
FokI GGATG 3 cut(s) 190, 245, 1157
FriOI GRGCYC 2 cut(s) 984, 1138
FspBI CTAG 2 cut(s) 140, 572
GlaI GCGC 4 cut(s) 567, 835, 1008, 1080
GsaI CCCAGC 2 cut(s) 1062, 1067
GsuI CTGGAG 3 cut(s) 424, 598, 889
HaeII RGCGCY 3 cut(s) 837, 1010, 1082
HaeIII GGCC 6 cut(s) 5, 345, 536, 545, 695, 1094
HgaI GACGC 1 cut(s) 184
HhaI GCGC 4 cut(s) 568, 836, 1009, 1081
Hin1I GRCGYC 3 cut(s) 195, 834, 1007
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 4 cut(s) 566, 834, 1007, 1079
HinP1I GCGC 4 cut(s) 566, 834, 1007, 1079
HincII GTYRAC 2 cut(s) 373, 958
HindII GTYRAC 2 cut(s) 373, 958
HinfI GANTC 6 cut(s) 437, 466, 661, 894, 909, 929
Hpy166II GTNNAC 2 cut(s) 373, 958
Hpy188I TCNGA 5 cut(s) 304, 550, 714, 1120, 1144
Hpy8I GTNNAC 2 cut(s) 373, 958
HpyAV CCTTC 6 cut(s) 130, 272, 604, 1044, 1125, 1267
HpyCH4IV ACGT 1 cut(s) 1197
HpyCH4V TGCA 4 cut(s) 588, 751, 1148, 1211
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 363, 402, 542, 692, 1154, 1163, 1187
HpyF3I CTNAG 2 cut(s) 248, 978
HpySE526I ACGT 1 cut(s) 1197
Hsp92I GRCGYC 3 cut(s) 195, 834, 1007
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 4 cut(s) 566, 834, 1007, 1079
KasI GGCGCC 2 cut(s) 833, 1006
KroI GCCGGC 2 cut(s) 1003, 1105
KroNI GCCGGC 2 cut(s) 1005, 1107
Kzo9I GATC 6 cut(s) 150, 382, 425, 492, 709, 805
LguI GCTCTTC 1 cut(s) 989
Lsp1109I GCAGC 3 cut(s) 2, 1015, 1169
LweI GCATC 2 cut(s) 528, 1135
MabI ACCWGGT 1 cut(s) 873
MaeI CTAG 2 cut(s) 140, 572
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 7 cut(s) 169, 856, 869, 877, 1193, 1198, 1243
MalI GATC 6 cut(s) 152, 384, 427, 494, 711, 807
MbiI CCGCTC 1 cut(s) 530
MboI GATC 6 cut(s) 150, 382, 425, 492, 709, 805
MboII GAAGA 3 cut(s) 940, 959, 976
MflI RGATCY 4 cut(s) 425, 492, 709, 805
MhlI GDGCHC 5 cut(s) 627, 790, 984, 1138, 1230
Mly113I GGCGCC 2 cut(s) 834, 1007
MlyI GAGTC 5 cut(s) 431, 655, 903, 918, 923
MmeI TCCRAC 2 cut(s) 327, 1122
MreI CGCCGGCG 1 cut(s) 1003
MroNI GCCGGC 2 cut(s) 1003, 1105
MseI TTAA 3 cut(s) 125, 605, 690
MspA1I CMGCKG 3 cut(s) 15, 618, 1160
MspR9I CCNGG 6 cut(s) 354, 423, 503, 516, 583, 875
MvaI CCWGG 1 cut(s) 875
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 8 cut(s) 62, 363, 402, 542, 692, 1154, 1163, 1187
NaeI GCCGGC 2 cut(s) 1005, 1107
NarI GGCGCC 2 cut(s) 834, 1007
NciI CCSGG 5 cut(s) 354, 423, 503, 516, 583
NdeII GATC 6 cut(s) 150, 382, 425, 492, 709, 805
NgoMIV GCCGGC 2 cut(s) 1003, 1105
NlaIII CATG 1 cut(s) 202
NmeAIII GCCGAG 3 cut(s) 342, 757, 1157
NmuCI GTSAC 7 cut(s) 169, 856, 869, 877, 1193, 1198, 1243
PaeR7I CTCGAG 1 cut(s) 488
PaqCI CACCTGC 1 cut(s) 1216
PciSI GCTCTTC 1 cut(s) 989
PcsI WCGNNNNNNNCGW 4 cut(s) 273, 852, 1007, 1148
PdiI GCCGGC 2 cut(s) 1005, 1107
PfeI GAWTC 1 cut(s) 466
PflFI GACNNNGTC 2 cut(s) 875, 920
PleI GAGTC 5 cut(s) 431, 655, 902, 917, 923
PluTI GGCGCC 2 cut(s) 837, 1010
PmaCI CACGTG 1 cut(s) 1198
PmlI CACGTG 1 cut(s) 1198
PpsI GAGTC 5 cut(s) 431, 655, 902, 917, 923
Ppu21I YACGTR 1 cut(s) 1198
PshAI GACNNNNGTC 1 cut(s) 1046
Psp124BI GAGCTC 2 cut(s) 984, 1138
Psp6I CCWGG 1 cut(s) 873
PspCI CACGTG 1 cut(s) 1198
PspEI GGTNACC 1 cut(s) 869
PspFI CCCAGC 2 cut(s) 1058, 1063
PspGI CCWGG 1 cut(s) 873
PspPI GGNCC 1 cut(s) 535
PsuI RGATCY 4 cut(s) 425, 492, 709, 805
PsyI GACNNNGTC 2 cut(s) 875, 920
RsaI GTAC 5 cut(s) 104, 113, 755, 845, 1174
RsaNI GTAC 5 cut(s) 103, 112, 754, 844, 1173
SacI GAGCTC 2 cut(s) 984, 1138
SalI GTCGAC 1 cut(s) 956
SapI GCTCTTC 1 cut(s) 989
SaqAI TTAA 3 cut(s) 125, 605, 690
Sau3AI GATC 6 cut(s) 150, 382, 425, 492, 709, 805
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 5 cut(s) 431, 655, 903, 918, 923
ScrFI CCNGG 6 cut(s) 354, 423, 503, 516, 583, 875
SduI GDGCHC 5 cut(s) 627, 790, 984, 1138, 1230
SexAI ACCWGGT 1 cut(s) 873
SfaNI GCATC 2 cut(s) 528, 1135
SfiI GGCCNNNNNGGCC 1 cut(s) 542
SfoI GGCGCC 2 cut(s) 835, 1008
Sfr274I CTCGAG 1 cut(s) 488
SgrAI CRCCGGYG 1 cut(s) 1003
SlaI CTCGAG 1 cut(s) 488
SmlI CTYRAG 3 cut(s) 488, 626, 791
SmoI CTYRAG 3 cut(s) 488, 626, 791
SspDI GGCGCC 2 cut(s) 833, 1006
SspMI CTAG 2 cut(s) 140, 572
SstI GAGCTC 2 cut(s) 984, 1138
StyD4I CCNGG 6 cut(s) 352, 421, 501, 514, 581, 873
StyI CCWWGG 2 cut(s) 696, 801
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 7 cut(s) 87, 267, 435, 489, 927, 957, 1013
TatI WGTACW 2 cut(s) 102, 111
TauI GCSGC 8 cut(s) 53, 56, 215, 396, 419, 1097, 1163, 1166
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 3 cut(s) 125, 605, 690
Tru9I TTAA 3 cut(s) 125, 605, 690
TscAI CASTG 4 cut(s) 925, 958, 967, 1230
TseFI GTSAC 7 cut(s) 169, 856, 869, 877, 1193, 1198, 1243
TseI GCWGC 3 cut(s) 15, 1028, 1157
Tsp45I GTSAC 7 cut(s) 169, 856, 869, 877, 1193, 1198, 1243
TspGWI ACGGA 8 cut(s) 220, 301, 445, 472, 927, 1060, 1128, 1200
TspRI CASTG 4 cut(s) 925, 958, 967, 1230
Tth111I GACNNNGTC 2 cut(s) 875, 920
XbaI TCTAGA 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 957
XspI CTAG 2 cut(s) 140, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.