Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022581

Physical Location & Seq

Genomic Coordinates Reverse (-)

44175012 .. 44175236

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGTTTCATCAAAGGCCTCATCGACTCTTTAGGCTCCGTCTTCTCCAACTCCGCCTCCTCCTCCTCATACCCAAACCCTAGCGCTTCCAATTCTTCCGCCATGGACGGCGTAGCTAGGCCTGGAACTGCTTCGGTCACCAACAAGCGCGTGGCGTACAAGCTCAAGGGGTACTTTGATTTGGCCAAGGAAGAGATCGCCAAGGCTGTTAGGGCTGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

74

Amino Acids

7.76

Weight (kDa)

9.1

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022581)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351021
rosa_multiflora	Rmu_sc0008688.1_g000012
rosa_samantha	Rh1AG230600 Rh1BG075300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	2 cut(s)	54, 99
AcoI	YGGCCR	1 cut(s)	183
AfaI	GTAC	2 cut(s)	158, 173
AfeI	AGCGCT	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	116, 163
AluI	AGCT	2 cut(s)	116, 163
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	3 cut(s)	16, 119, 183
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	86, 150
AsuHPI	GGTGA	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	2 cut(s)	81, 117
BfoI	RGCGCY	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	102, 186, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	102, 186, 201
BseRI	GAGGAG	3 cut(s)	49, 52, 55
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	18, 121, 185
BsnI	GGCC	3 cut(s)	18, 121, 185
Bsp143I	GATC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	2 cut(s)	54, 99
BspANI	GGCC	3 cut(s)	18, 121, 185
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	102, 186, 201
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	3 cut(s)	102, 186, 201
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 150
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	18, 121, 185
BtgI	CCRYGG	1 cut(s)	102
CfoI	GCGC	2 cut(s)	86, 150
Csp6I	GTAC	2 cut(s)	157, 172
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	8 cut(s)	18, 36, 116, 121, 163, 185, 206, 215
CviKI_1	RGCY	8 cut(s)	18, 36, 116, 121, 163, 185, 206, 215
CviQI	GTAC	2 cut(s)	157, 172
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	2 cut(s)	43, 88
Eco130I	CCWWGG	3 cut(s)	102, 186, 201
Eco147I	AGGCCT	2 cut(s)	18, 121
Eco47III	AGCGCT	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	3 cut(s)	102, 186, 201
ErhI	CCWWGG	3 cut(s)	102, 186, 201
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	70, 104
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	1 cut(s)	102
FspBI	CTAG	2 cut(s)	81, 117
GlaI	GCGC	2 cut(s)	85, 149
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	18, 121, 185
HhaI	GCGC	2 cut(s)	86, 150
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	2 cut(s)	84, 148
HinP1I	GCGC	2 cut(s)	84, 148
HinfI	GANTC	1 cut(s)	26
HphI	GGTGA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	2 cut(s)	84, 148
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	2 cut(s)	108, 135
MaeI	CTAG	2 cut(s)	81, 117
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	3 cut(s)	34, 87, 203
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	29, 67, 70, 73, 76
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	136
PceI	AGGCCT	2 cut(s)	18, 121
PdmI	GAANNNNTTC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	158, 173
RsaNI	GTAC	2 cut(s)	157, 172
Sau3AI	GATC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	2 cut(s)	118, 165
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	91
SseBI	AGGCCT	2 cut(s)	18, 121
SsiI	CCGC	2 cut(s)	54, 99
SspMI	CTAG	2 cut(s)	81, 117
StuI	AGGCCT	2 cut(s)	18, 121
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	3 cut(s)	102, 186, 201
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	81, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.