Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0022581

Physical Location & Seq

Genomic Coordinates Reverse (-)

43706178 .. 43708260

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGACGGTGTAGCTAGGCCTGGAACTACTTCGGTCACCAACGAGTGCGTGGCGTACAAGCTCAAGGGGTACTTTGATTTGTCCAAGGAAGAGATCGCCAAGGCTGTTAGGGCTGAAGAATGGGGCTTGGTTGAAGACGCCGTTGGACACTATAATAGAGCCCAGAGAATTCGAGTCGAAGCTAGCTCCACTCCAATCCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

68

Amino Acids

7.52

Weight (kDa)

6.06

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022581)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351021
rosa_multiflora	Rmu_sc0008688.1_g000012
rosa_samantha	Rh1AG230600 Rh1BG075300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	56, 71
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	14, 61, 182, 186
AluI	AGCT	4 cut(s)	14, 61, 182, 186
AoxI	GGCC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	21
BfaI	CTAG	2 cut(s)	15, 183
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BmtI	GCTAGC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	84, 99
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	84, 99
BseGI	GGATG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	84, 99
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	84, 99
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	184
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	21
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	184
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	55, 70
CviJI	RGCY	9 cut(s)	14, 19, 61, 104, 113, 126, 161, 182, 186
CviKI_1	RGCY	9 cut(s)	14, 19, 61, 104, 113, 126, 161, 182, 186
CviQI	GTAC	2 cut(s)	55, 70
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	84, 99
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	84, 99
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	84, 99
FaiI	YATR	2 cut(s)	153, 205
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	15, 183
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	3 cut(s)	6, 33, 176
MaeI	CTAG	2 cut(s)	15, 183
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	3 cut(s)	101, 128, 146
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	93
NheI	GCTAGC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	56, 71
RsaNI	GTAC	2 cut(s)	55, 70
Sau3AI	GATC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	4 cut(s)	16, 63, 184, 188
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	168
SseBI	AGGCCT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	15, 183
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	2 cut(s)	84, 99
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	172, 177
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	2 cut(s)	15, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.