Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008688.1

Orthogroup ID

OG0022581

Physical Location & Seq

Genomic Coordinates Forward (+)

65897 .. 66262

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008688.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgagtttcatcaaaggcctcatcgactctttaggctccgtcttctctgacttcgccgcctcctcctcatacctaaaccctagcgcttccaattctttcgccatggacgacgtagctaggcctggaactgcttcggtcaccaacgatcgtgtggcttacaagctcaaggggtactttgatttggccaaggaagagatcgccaaggctgttagggctgaagaatggggcttggttgaagacgccgttggacaccataataaagcccagagaattctagtcgaagctagctccactccagtgccttcctttatcagcaccaggttctcgattttatcctcaatttttgattcaattgcatactgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

121

Amino Acids

13.06

Weight (kDa)

5.25

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022581)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351021
rosa_multiflora	Rmu_sc0008688.1_g000012
rosa_samantha	Rh1AG230600 Rh1BG075300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	173
AfeI	AGCGCT	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	236, 351
AjnI	CCWGG	2 cut(s)	121, 317
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	4 cut(s)	116, 163, 284, 288
AluI	AGCT	4 cut(s)	116, 163, 284, 288
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	3 cut(s)	16, 119, 183
ApoI	RAATTY	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	34, 243
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	123, 319
BfaI	CTAG	4 cut(s)	81, 117, 275, 285
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	123, 319
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	123, 319
BmtI	GCTAGC	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	34, 243
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	102, 186, 201
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	123, 319
BseDI	CCNNGG	3 cut(s)	102, 186, 201
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	52, 55
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	18, 121, 185
BsiEI	CGRYCG	1 cut(s)	148
BsnI	GGCC	3 cut(s)	18, 121, 185
Bsp143I	GATC	2 cut(s)	145, 195
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	18, 121, 185
BspLI	GGNNCC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	102, 186, 201
BssMI	GATC	2 cut(s)	145, 195
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	3 cut(s)	102, 186, 201
Bst2UI	CCWGG	2 cut(s)	123, 319
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	286
BstDSI	CCRYGG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	148, 198
BstMBI	GATC	2 cut(s)	145, 195
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	123, 319
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	121, 317
BstV2I	GAAGAC	2 cut(s)	34, 243
BsuRI	GGCC	3 cut(s)	18, 121, 185
BtgI	CCRYGG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	86
CseI	GACGC	1 cut(s)	248
CsiI	ACCWGGT	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	2 cut(s)	147, 197
DpnII	GATC	2 cut(s)	145, 195
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	3 cut(s)	102, 186, 201
Eco147I	AGGCCT	2 cut(s)	18, 121
Eco47III	AGCGCT	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	121, 317
EcoT14I	CCWWGG	3 cut(s)	102, 186, 201
ErhI	CCWWGG	3 cut(s)	102, 186, 201
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	70, 104, 255, 358
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	4 cut(s)	81, 117, 275, 285
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	18, 121, 185
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	26, 347
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	145, 195
LmnI	GCTCC	2 cut(s)	41, 293
LpnPI	CCDG	6 cut(s)	108, 135, 278, 304, 309, 331
MabI	ACCWGGT	1 cut(s)	317
MaeI	CTAG	4 cut(s)	81, 117, 275, 285
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	147, 197
MboI	GATC	2 cut(s)	145, 195
MboII	GAAGA	4 cut(s)	34, 203, 230, 248
MfeI	CAATTG	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	91, 270, 339, 351
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	29, 70, 73, 76, 346
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	123, 319
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	2 cut(s)	123, 319
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	145, 195
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	136
OliI	CACNNNNGTG	1 cut(s)	296
PceI	AGGCCT	2 cut(s)	18, 121
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	58
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	121, 317
PspEI	GGTNACC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	121, 317
PspN4I	GGNNCC	1 cut(s)	37
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	296
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	145, 195
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	123, 319
SetI	ASST	7 cut(s)	75, 114, 118, 165, 286, 290, 323
SexAI	ACCWGGT	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	4 cut(s)	91, 270, 339, 351
SseBI	AGGCCT	2 cut(s)	18, 121
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	4 cut(s)	81, 117, 275, 285
StuI	AGGCCT	2 cut(s)	18, 121
StyD4I	CCNGG	2 cut(s)	121, 317
StyI	CCWWGG	3 cut(s)	102, 186, 201
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	24, 279, 326
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	4 cut(s)	91, 270, 339, 351
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	303
XapI	RAATTY	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	4 cut(s)	81, 117, 275, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.