Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0022581

Physical Location & Seq

Genomic Coordinates Reverse (-)

11626690 .. 11627913

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGACGGCGTAGCTGGGCCCGGAGCTGCTGTTAGGTCTGAAGAATGGGGCTTGGTTGAAGACGCCGTTGCACACTATAATAGCGCCCAGAGAATTCTAGCCGAAGCTAGCTCCACTCCAGTGCCTTCCTTTATCAGCGCCAGTGAGAGCGAGAGAAGGTTACAAGTCTTGAGTAGACGTCCAGGTGGTACATCCATAAGCAAGCTACATCAACAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

73

Amino Acids

7.8

Weight (kDa)

6.72

Isoelectric Point (pI)

73.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022581)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351021
rosa_multiflora	Rmu_sc0008688.1_g000012
rosa_samantha	Rh1AG230600 Rh1BG075300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	175
AclI	AACGTT	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	63, 178
AfaI	GTAC	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	181
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	5 cut(s)	14, 26, 107, 111, 205
AluI	AGCT	5 cut(s)	14, 26, 107, 111, 205
AoxI	GGCC	1 cut(s)	17
ApaI	GGGCCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	86, 140
AspS9I	GGNCC	2 cut(s)	17, 18
AsuC2I	CCSGG	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	22, 50
BciT130I	CCWGG	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	21
BfaI	CTAG	2 cut(s)	98, 108
BfoI	RGCGCY	2 cut(s)	87, 141
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	21, 183
BmgT120I	GGNCC	2 cut(s)	17, 18
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	21, 183
BmtI	GCTAGC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	21
BsaHI	GRCGYC	2 cut(s)	63, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	2 cut(s)	119, 141
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	119, 141
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	21
BsnI	GGCC	1 cut(s)	19
Bsp120I	GGGCCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	119, 141
BssNI	GRCGYC	2 cut(s)	63, 178
Bst2UI	CCWGG	1 cut(s)	183
BstACI	GRCGYC	2 cut(s)	63, 178
BstC8I	GCNNGC	2 cut(s)	109, 203
BstF5I	GGATG	1 cut(s)	191
BstH2I	RGCGCY	2 cut(s)	87, 141
BstHHI	GCGC	2 cut(s)	86, 140
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	19, 181
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	126, 148
Cac8I	GCNNGC	2 cut(s)	109, 203
CfoI	GCGC	2 cut(s)	86, 140
Cfr13I	GGNCC	2 cut(s)	17, 18
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	189
CviJI	RGCY	8 cut(s)	14, 19, 26, 51, 101, 107, 111, 205
CviKI_1	RGCY	8 cut(s)	14, 19, 26, 51, 101, 107, 111, 205
CviQI	GTAC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	21
FaiI	YATR	2 cut(s)	78, 197
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	98, 108
GlaI	GCGC	2 cut(s)	85, 139
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	2 cut(s)	87, 141
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	86, 140
Hin1I	GRCGYC	2 cut(s)	63, 178
Hin6I	GCGC	2 cut(s)	84, 138
HinP1I	GCGC	2 cut(s)	84, 138
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	135, 150
HpyCH4IV	ACGT	2 cut(s)	178, 217
HpyCH4V	TGCA	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	178, 217
Hsp92I	GRCGYC	2 cut(s)	63, 178
HspAI	GCGC	2 cut(s)	84, 138
LmnI	GCTCC	2 cut(s)	23, 116
LpnPI	CCDG	6 cut(s)	34, 101, 132, 154, 168, 195
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	98, 108
MaeII	ACGT	2 cut(s)	178, 217
MaeIII	GTNAC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	53, 71
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	21, 183
MvaI	CCWGG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	21
NheI	GCTAGC	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	28
Psp1406I	AACGTT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	19
PspOMI	GGGCCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	17, 18
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	2 cut(s)	17, 18
ScrFI	CCNGG	2 cut(s)	21, 183
SduI	GDGCHC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	93
SspMI	CTAG	2 cut(s)	98, 108
StyD4I	CCNGG	2 cut(s)	19, 181
TaiI	ACGT	2 cut(s)	181, 220
TasI	AATT	1 cut(s)	93
TscAI	CASTG	2 cut(s)	126, 148
TseI	GCWGC	1 cut(s)	26
TspRI	CASTG	2 cut(s)	126, 148
XapI	RAATTY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	175
XspI	CTAG	2 cut(s)	98, 108
ZraI	GACGTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.