RchiOBHm_Chr1g0354641

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
47513441 .. 47514642
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGTCGAAGAAGAACGATCTTGCTCGTCGGAAAAGGCAACATGAATTCGAACTCAAAAGAGAGAAAGAAGCGAAAGAAAAGAGGGCAAAGAAGCTTCAAGCAAAGAAGAGCAAGATGAAAGTTGATGGTACTGAGAAGAAGAAGAAGGGTGGGTTTCAAGTGGGCAAGAAGAAGTTGAAGACCAAAATGACGGCGTTGGCAAAGGCTAAAGCTGCCCAAGCGATGGAGGTTGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.11

Weight (kDa)

10.49

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13990 FvH4_7g13990
malus_domestica MD01G1056300.v1.1
pyrus_communis pycom01g08180
rosa_chinensis RchiOBHm_Chr1g0354641
rosa_multiflora Rmu_sc0006632.1_g000006
rosa_roxburghii Rroxscaffold_4G00300880
rosa_rugosa Rorug01G0243600
rosa_samantha Rh1AG254800 Rh1BG225400 Rh1CG237900 Rh1DG253400
rosa_wichuraiana Rw1G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 223
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 98, 158, 178
AluBI AGCT 2 cut(s) 94, 212
AluI AGCT 2 cut(s) 94, 212
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 119, 217
BceAI ACGGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 48
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 132
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 212, 218
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 41
CviJI RGCY 3 cut(s) 94, 206, 212
CviKI_1 RGCY 3 cut(s) 94, 206, 212
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 44
FaeI CATG 1 cut(s) 44
FaiI YATR 1 cut(s) 42
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
Hin1II CATG 1 cut(s) 44
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 218
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 199
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 8 cut(s) 19, 22, 118, 148, 151, 154, 181, 190
MluCI AATT 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 2 cut(s) 75, 220
MwoI GCNNNNNNNGC 2 cut(s) 212, 218
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 44
NspV TTCGAA 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 214
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 101
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 16
SetI ASST 3 cut(s) 96, 214, 231
SfuI TTCGAA 1 cut(s) 48
SgeI CNNG 8 cut(s) 32, 36, 53, 110, 124, 170, 178, 230
Sse9I AATT 1 cut(s) 44
TaqI TCGA 2 cut(s) 5, 48
TasI AATT 1 cut(s) 44
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 57, 131
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.