RchiOBHm_Chr1g0360781

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019141
Physical Location & Seq
Forward (+)
52636013 .. 52636838
826 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGGTACAAATTTCCATCTACACCTCCCTCATCTTCATCATCACAACAACCACAAGAACAAGCAGGTGAATGGCCGAGACGTTCCAAAGGGGTGTCTGGCAATCAAGGTGGGCCAGGGAGAAGAGCAGCAGAGGTTCGTGGTGCCTGTGATTTACTTCAATCACCCACTCTTCATTCAGCTCTTGAAGGAAGCCGAGGAGGAGTACGGGTTTGATCAGAAGGGCACCATCAGCATCCCTTGCCATGTGGAGGAGTTCCGGTATGTTCAGGGCATGATTGATAGGGAGCGGTCAGTCCACAGCCACCACCATCATCACCACGTAGGAGGGTGCTTTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

114

Amino Acids

13.32

Weight (kDa)

7.3

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 92 1.4e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46690
fragaria_vesca FvH4_7g17340
rosa_chinensis RchiOBHm_Chr1g0360781
rosa_laevigata RLG00000027787
rosa_multiflora Rmu_ssc0000022.1_g000031
rosa_roxburghii Rroxscaffold_4G00295830
rosa_rugosa Rorug01G0281300
rosa_wichuraiana Rw1G025960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AccB1I GGYRCC 2 cut(s) 142, 224
AccBSI CCGCTC 1 cut(s) 289
AciI CCGC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 2 cut(s) 7, 206
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 160, 187
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 2 cut(s) 73, 112
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 3 cut(s) 79, 155, 308
BaeGI GKGCMC 1 cut(s) 227
BanI GGYRCC 2 cut(s) 142, 224
BbvI GCAGC 1 cut(s) 139
BccI CCATC 3 cut(s) 24, 236, 318
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 144, 226
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 115, 195
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 115, 195
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 250
BseRI GAGGAG 3 cut(s) 212, 215, 266
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 2 cut(s) 75, 114
BshNI GGYRCC 2 cut(s) 142, 224
BsiSI CCGG 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 75, 114
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 289
BspANI GGCC 2 cut(s) 75, 114
BspLI GGNNCC 2 cut(s) 144, 226
BspMI ACCTGC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 2 cut(s) 142, 224
BsrBI CCGCTC 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 115, 195
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 117, 176
BstAPI GCANNNNNTGC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 322
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 231, 240
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 75, 114
BtsCI GGATG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 6, 205
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 2 cut(s) 245, 274
CviJI RGCY 5 cut(s) 75, 114, 181, 194, 303
CviKI_1 RGCY 5 cut(s) 75, 114, 181, 194, 303
CviQI GTAC 2 cut(s) 6, 205
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 117, 176
EarI CTCTTC 2 cut(s) 117, 176
EcoRII CCWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 2 cut(s) 248, 277
FaiI YATR 3 cut(s) 246, 264, 275
FatI CATG 2 cut(s) 244, 273
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 75, 114
HapII CCGG 1 cut(s) 259
Hin1II CATG 2 cut(s) 248, 277
HpaII CCGG 1 cut(s) 259
HphI GGTGA 3 cut(s) 79, 155, 308
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 181, 214
HpyCH4IV ACGT 2 cut(s) 81, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 240
HpySE526I ACGT 2 cut(s) 81, 321
Hsp92II CATG 2 cut(s) 248, 277
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 7 cut(s) 50, 83, 101, 128, 159, 254, 272
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 243
MaeII ACGT 2 cut(s) 81, 321
MalI GATC 1 cut(s) 216
MbiI CCGCTC 1 cut(s) 289
MboI GATC 1 cut(s) 214
MboII GAAGA 3 cut(s) 26, 134, 163
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 1 cut(s) 10
MnlI CCTC 7 cut(s) 35, 39, 126, 190, 193, 244, 320
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 231, 240
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 248, 277
NlaIV GGNNCC 2 cut(s) 144, 226
NmeAIII GCCGAG 2 cut(s) 101, 220
PaqCI CACCTGC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 144, 226
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 2 cut(s) 7, 206
RsaNI GTAC 2 cut(s) 6, 205
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 227
SetI ASST 7 cut(s) 27, 69, 84, 111, 137, 183, 324
SfaNI GCATC 1 cut(s) 243
Sse9I AATT 1 cut(s) 10
SsiI CCGC 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 114
TaiI ACGT 2 cut(s) 84, 324
TasI AATT 1 cut(s) 10
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 26, 163
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.