RchiOBHm_Chr1g0362231

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022583
Physical Location & Seq
Reverse (-)
53910596 .. 53912048
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGTCTAGGGAGTGCCCTCAGGGTGGTGGTAGAGGGGGGAACTGTTACAAGTGTGGTGAATCTGGACACATGTCTAGGGAGTGCCCTCAGGGCGGAGGGGGTGGAGGTGGTAACTGTTTCAAGTGCGGTGAGTCTGGACATATGTCAAGGGAGTGCCCTCAGGGCGGCGGTGGTGGTCGAGGGGCAGGAGGTGGTAACTGTTTCAAGTGCGGTGAGTCTGGACACATGTCTAGGGAGTGCCCTCAGGGCGGCAGTGGTGGTAGAGGGGCTGGAGGTGGGAACTGTTACAAGTGTGGTGAGTCTGGACACATGTCTAGGGAGTGCCCTCAGGGTGGCGGCGGTGGTGGTAGAGGGAGTGGGGGTGGGGCTGGGAACTGTTTCAAATGTGGTGAGTCTGGACACATGTCTAGGGAGTGTCCTCAGGGCGGCGGTGGTAGAGGGGCTGGAAGTGGGAATTGTTTCAAGTGTGGTGAGTCTGGACACATGGCTAGGGACTGCTCTCAGGGAGGTGGTAGCTATGGCAACTTCGGTGGTGGAGCAAAGTCCACTGATTCATGGAGCAAGCGTGCTTGGGATGGTGGAAGTGGCAGCGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAACCAGCAGCAAGCTCTTGGGGTAAGGGGGATGGTGGAAGTGGTGGACATAGTGATGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCTTGGGGTAAGGCAGATGGTGGAAGTGGCAGAGCTAGTGGTGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCCTGGGGTAAGGGAGATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAACCAGCAGCAAGCACTTGGGGTAAGGGAGATGGTGGAAGTGGCGGAGATGGTGGTGAAGCAAAGCCTGCTGATCCATGGAGCAAGCCATCAGCAAGTGCTTGGGGTAAGGGAGATGGCGGAAGTGGCGGAGCTAGTGGTGAAGCAAAGCCTGCTGATCCTTGGAGCAAGCCATCAGCAAGTGCTTGGGGTAAGAAAGATGGTGGAAGTGGCAGCGGAGGGTGGTGA

Protein Analysis

370

Amino Acids

34.77

Weight (kDa)

8.56

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 14 - 30 2e-07 Zinc knuckle
zf-CCHC PF00098 38 - 54 4e-07 Zinc knuckle
zf-CCHC PF00098 66 - 82 4e-07 Zinc knuckle
zf-CCHC PF00098 94 - 110 2e-07 Zinc knuckle
zf-CCHC PF00098 125 - 141 4e-07 Zinc knuckle
zf-CCHC PF00098 152 - 168 5.3e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022583)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0362231
rosa_samantha Rh1BG268100 Rh1CG286300 Rh1DG298200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 953, 1037
AfaI GTAC 3 cut(s) 625, 748, 829
AfiI CCNNNNNNNGG 6 cut(s) 23, 92, 164, 248, 332, 425
AflIII ACRYGT 4 cut(s) 69, 225, 309, 402
AgsI TTSAA 4 cut(s) 121, 205, 382, 463
AjnI CCWGG 1 cut(s) 839
AluBI AGCT 9 cut(s) 516, 615, 647, 675, 756, 791, 837, 872, 1019
AluI AGCT 9 cut(s) 516, 615, 647, 675, 756, 791, 837, 872, 1019
AlwI GGATC 2 cut(s) 953, 1037
ApeKI GCWGC 7 cut(s) 588, 608, 668, 731, 812, 893, 1098
Asp700I GAANNNNTTC 2 cut(s) 377, 458
AspS9I GGNCC 1 cut(s) 596
AvaII GGWCC 1 cut(s) 596
AxyI CCTNAGG 6 cut(s) 18, 87, 159, 243, 327, 420
BaeGI GKGCMC 5 cut(s) 17, 86, 158, 242, 326
BbvI GCAGC 6 cut(s) 600, 620, 680, 743, 824, 905
BciT130I CCWGG 1 cut(s) 841
BfaI CTAG 8 cut(s) 6, 75, 231, 315, 408, 489, 792, 1020
BglI GCCNNNNNGGC 3 cut(s) 90, 162, 246
Bme1390I CCNGG 1 cut(s) 841
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 841
BoxI GACNNNNGTC 5 cut(s) 70, 142, 226, 310, 403
BpmI CTGGAG 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 840, 962, 1046
BsaXI ACNNNNNCTCC 4 cut(s) 346, 376, 550, 580
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 92, 164, 248, 332, 425
Bse21I CCTNAGG 6 cut(s) 18, 87, 159, 243, 327, 420
BseBI CCWGG 1 cut(s) 841
BseDI CCNNGG 3 cut(s) 840, 962, 1046
BseGI GGATG 2 cut(s) 580, 697
BseLI CCNNNNNNNGG 6 cut(s) 23, 92, 164, 248, 332, 425
BseMII CTCAG 7 cut(s) 32, 101, 173, 257, 341, 434, 515
BseSI GKGCMC 5 cut(s) 17, 86, 158, 242, 326
BseXI GCAGC 6 cut(s) 600, 620, 680, 743, 824, 905
BseYI CCCAGC 1 cut(s) 368
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 6 cut(s) 23, 92, 164, 248, 332, 425
BsmFI GGGAC 1 cut(s) 506
Bsp1286I GDGCHC 5 cut(s) 17, 86, 158, 242, 326
Bsp143I GATC 2 cut(s) 958, 1042
Bsp19I CCATGG 1 cut(s) 962
BspCNI CTCAG 7 cut(s) 31, 100, 172, 256, 340, 433, 514
BspPI GGATC 2 cut(s) 953, 1037
BssECI CCNNGG 3 cut(s) 840, 962, 1046
BssMI GATC 2 cut(s) 958, 1042
BssT1I CCWWGG 2 cut(s) 962, 1046
Bst2UI CCWGG 1 cut(s) 841
Bst4CI ACNGT 5 cut(s) 44, 116, 200, 284, 377
BstAPI GCANNNNNTGC 2 cut(s) 953, 1037
BstDEI CTNAG 7 cut(s) 18, 87, 159, 243, 327, 420, 501
BstDSI CCRYGG 1 cut(s) 962
BstF5I GGATG 2 cut(s) 580, 697
BstKTI GATC 2 cut(s) 961, 1045
BstMBI GATC 2 cut(s) 958, 1042
BstNI CCWGG 1 cut(s) 841
BstNSI RCATGY 4 cut(s) 73, 229, 313, 406
BstPAI GACNNNNGTC 5 cut(s) 70, 142, 226, 310, 403
BstSCI CCNGG 1 cut(s) 839
BstSLI GKGCMC 5 cut(s) 17, 86, 158, 242, 326
BstV1I GCAGC 6 cut(s) 600, 620, 680, 743, 824, 905
Bsu36I CCTNAGG 6 cut(s) 18, 87, 159, 243, 327, 420
BtgI CCRYGG 1 cut(s) 962
BtsCI GGATG 2 cut(s) 580, 697
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 259, 546
Cfr13I GGNCC 1 cut(s) 596
Csp6I GTAC 3 cut(s) 624, 747, 828
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 7 cut(s) 70, 226, 310, 403, 484, 555, 963
CviQI GTAC 3 cut(s) 624, 747, 828
DdeI CTNAG 7 cut(s) 18, 87, 159, 243, 327, 420, 501
DpnI GATC 2 cut(s) 960, 1044
DpnII GATC 2 cut(s) 958, 1042
EciI GGCGGA 6 cut(s) 108, 657, 882, 945, 1020, 1029
Eco130I CCWWGG 2 cut(s) 962, 1046
Eco47I GGWCC 1 cut(s) 596
Eco81I CCTNAGG 6 cut(s) 18, 87, 159, 243, 327, 420
EcoRII CCWGG 1 cut(s) 839
EcoT14I CCWWGG 2 cut(s) 962, 1046
ErhI CCWWGG 2 cut(s) 962, 1046
FaeI CATG 7 cut(s) 73, 229, 313, 406, 487, 558, 966
FaqI GGGAC 1 cut(s) 506
FatI CATG 7 cut(s) 69, 225, 309, 402, 483, 554, 962
FauNDI CATATG 1 cut(s) 141
FokI GGATG 2 cut(s) 587, 704
FspBI CTAG 8 cut(s) 6, 75, 231, 315, 408, 489, 792, 1020
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 291
Hin1II CATG 7 cut(s) 73, 229, 313, 406, 487, 558, 966
HinfI GANTC 7 cut(s) 59, 131, 215, 299, 392, 473, 551
Hpy166II GTNNAC 3 cut(s) 546, 596, 707
Hpy188III TCNNGA 6 cut(s) 63, 135, 219, 303, 396, 477
Hpy8I GTNNAC 3 cut(s) 546, 596, 707
HpyCH4III ACNGT 5 cut(s) 44, 116, 200, 284, 377
HpyF3I CTNAG 7 cut(s) 18, 87, 159, 243, 327, 420, 501
Hsp92II CATG 7 cut(s) 73, 229, 313, 406, 487, 558, 966
Kzo9I GATC 2 cut(s) 958, 1042
LmnI GCTCC 8 cut(s) 536, 558, 644, 842, 869, 966, 1016, 1050
Lsp1109I GCAGC 6 cut(s) 600, 620, 680, 743, 824, 905
MaeI CTAG 8 cut(s) 6, 75, 231, 315, 408, 489, 792, 1020
MaeIII GTNAC 4 cut(s) 44, 110, 194, 284
MalI GATC 2 cut(s) 960, 1044
MboI GATC 2 cut(s) 958, 1042
MhlI GDGCHC 5 cut(s) 17, 86, 158, 242, 326
MluCI AATT 1 cut(s) 454
MlyI GAGTC 5 cut(s) 140, 224, 308, 401, 482
MroXI GAANNNNTTC 2 cut(s) 377, 458
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 591, 1101
MspR9I CCNGG 1 cut(s) 841
MvaI CCWGG 1 cut(s) 841
NcoI CCATGG 1 cut(s) 962
NdeI CATATG 1 cut(s) 141
NdeII GATC 2 cut(s) 958, 1042
NlaIII CATG 7 cut(s) 73, 229, 313, 406, 487, 558, 966
NspI RCATGY 4 cut(s) 73, 229, 313, 406
PciI ACATGT 4 cut(s) 69, 225, 309, 402
PdmI GAANNNNTTC 2 cut(s) 377, 458
PfeI GAWTC 2 cut(s) 59, 551
PleI GAGTC 5 cut(s) 139, 223, 307, 400, 481
PpsI GAGTC 5 cut(s) 139, 223, 307, 400, 481
PscI ACATGT 4 cut(s) 69, 225, 309, 402
PshAI GACNNNNGTC 5 cut(s) 70, 142, 226, 310, 403
Psp6I CCWGG 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 1 cut(s) 839
PspPI GGNCC 1 cut(s) 596
RsaI GTAC 3 cut(s) 625, 748, 829
RsaNI GTAC 3 cut(s) 624, 747, 828
RseI CAYNNNNRTG 1 cut(s) 714
Sau3AI GATC 2 cut(s) 958, 1042
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 5 cut(s) 140, 224, 308, 401, 482
ScrFI CCNGG 1 cut(s) 841
SduI GDGCHC 5 cut(s) 17, 86, 158, 242, 326
SinI GGWCC 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 714
Sse9I AATT 1 cut(s) 454
SspMI CTAG 8 cut(s) 6, 75, 231, 315, 408, 489, 792, 1020
StyD4I CCNGG 1 cut(s) 839
StyI CCWWGG 2 cut(s) 962, 1046
TaaI ACNGT 5 cut(s) 44, 116, 200, 284, 377
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 454
TauI GCSGC 4 cut(s) 168, 252, 339, 429
TfiI GAWTC 2 cut(s) 59, 551
TscAI CASTG 2 cut(s) 259, 553
TseI GCWGC 7 cut(s) 588, 608, 668, 731, 812, 893, 1098
TspDTI ATGAA 2 cut(s) 543, 732
TspRI CASTG 2 cut(s) 259, 553
VpaK11BI GGWCC 1 cut(s) 596
XceI RCATGY 4 cut(s) 73, 229, 313, 406
XmnI GAANNNNTTC 2 cut(s) 377, 458
XspI CTAG 8 cut(s) 6, 75, 231, 315, 408, 489, 792, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.