Rh1CG286300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0022583
Physical Location & Seq
Reverse (-)
55764701 .. 55766315
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG286300.1

Sequence Viewer

Length: 1188 bp
ATGTCAAGGGAGTGCCCTCAGGGCGGCGGTGGTGGTAGAGGGGCAGGAGGTGGTAACTGTTTCAAGTGCGGTGAGTCTGGACACATGTCTAGGGAGTGCCCTCAGGGCGGCAGTGGTGGTAGAGGGGCTGGAGGTGGGAACTGTTACAAGTGTGGTGAGTCTGGACACATGTCTAGGGAGTGCCCTCAGGGCGGCGGCGGTGGTGGTAGAGGGAGTGGGGGTGGGAACTGTTTCAAATGTGGTGAGTCTGGACACATGTCTAGGGAGTGTCCTCAGGGCGGCGGTGGTAGAGGGGCTGGAAGTGGGAACTGTTTCAAGTGTGGTGAGTCTGGACACATGGCTAGGGACTGCTCTCAGGGAGGTGGTAGCTATGGCAACTTCGGTGGTGGAGCAAAGTCCACTGATTCATGGAGCAAGCGTTCTTGGGGTACTGGAGATGGTGGAAGTGGCGGTGATGGAGCAAAACCAGCAGCAAGCTCTTGGGGTACCACAGATGGTGGAAGTGGCTTTGGTGGTGGAGCAAAGCCCACTGATTCATGGAGCAAGCGTGCTTGGGGTACTGGAGATGGTGGAAGTGGTAGCGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGGTGGAAGTGGCAGCGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGATGGTGAAGCAAAACCAGCAGCAAGCTTTTGGGGTAAGGGGGATGGTGGAAGTGGTGGACATAGTGATGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCTTGGGGTAAGGCAGATGGTGGAAGTGGCAGAGCTAGTGGTGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCCTGGGGTAAGGGAGATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAACCAGCAGCAAGCACTTGGGGTAAGGGAGATGGTGGAAGTGGCGGAGATGGTGGTGAAGCAAAGCCTGCTGATCCATGGAGCAAGCCATCAGCAAGTGCTTGGGGTAAGGGAGATGGCGGAAGTGGCGGAGCTAGTGGTGAAGCAAAGCCTGCTGATCCTTGGAGCAAGCCATCAGCAAGTGCTTGGGTCTACTTGGTGCTCAAAATAGCCAAGCTGGGACTAAAATTCAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

37.01

Weight (kDa)

8.82

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 19 - 35 4.3e-07 Zinc knuckle
zf-CCHC PF00098 47 - 63 2.2e-07 Zinc knuckle
zf-CCHC PF00098 76 - 92 4.3e-07 Zinc knuckle
zf-CCHC PF00098 103 - 119 5.7e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022583)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0362231
rosa_samantha Rh1BG268100 Rh1CG286300 Rh1DG298200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 485
AccI GTMKAC 1 cut(s) 1140
AclWI GGATC 2 cut(s) 1016, 1100
AcsI RAATTY 1 cut(s) 1175
AfaI GTAC 7 cut(s) 430, 487, 559, 616, 688, 811, 892
AfiI CCNNNNNNNGG 4 cut(s) 23, 107, 191, 278
AflIII ACRYGT 3 cut(s) 84, 168, 255
AgsI TTSAA 4 cut(s) 64, 235, 316, 1180
AjnI CCWGG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
Alw21I GWGCWC 1 cut(s) 1152
AlwI GGATC 2 cut(s) 1016, 1100
ApeKI GCWGC 8 cut(s) 470, 599, 651, 671, 731, 794, 875, 956
ApoI RAATTY 1 cut(s) 1175
Asp700I GAANNNNTTC 2 cut(s) 230, 311
Asp718I GGTACC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 587, 659
AvaII GGWCC 2 cut(s) 587, 659
AxyI CCTNAGG 4 cut(s) 18, 102, 186, 273
BaeGI GKGCMC 3 cut(s) 17, 101, 185
BanI GGYRCC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 1152
BbvI GCAGC 8 cut(s) 482, 611, 663, 683, 743, 806, 887, 968
BciT130I CCWGG 1 cut(s) 904
BfaI CTAG 6 cut(s) 90, 174, 261, 342, 855, 1083
BglI GCCNNNNNGGC 3 cut(s) 21, 105, 189
Bme1390I CCNGG 1 cut(s) 904
Bme18I GGWCC 2 cut(s) 587, 659
BmgT120I GGNCC 2 cut(s) 587, 659
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 904
BoxI GACNNNNGTC 3 cut(s) 85, 169, 256
BpmI CTGGAG 3 cut(s) 150, 453, 582
BsaJI CCNNGG 3 cut(s) 903, 1025, 1109
BsaXI ACNNNNNCTCC 6 cut(s) 205, 235, 403, 433, 532, 562
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 107, 191, 278
Bse1I ACTGG 2 cut(s) 436, 565
Bse21I CCTNAGG 4 cut(s) 18, 102, 186, 273
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 3 cut(s) 903, 1025, 1109
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 4 cut(s) 23, 107, 191, 278
BseMII CTCAG 5 cut(s) 32, 116, 200, 287, 368
BseNI ACTGG 2 cut(s) 436, 565
BseSI GKGCMC 3 cut(s) 17, 101, 185
BseXI GCAGC 8 cut(s) 482, 611, 663, 683, 743, 806, 887, 968
BseYI CCCAGC 1 cut(s) 1165
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 1152
BslFI GGGAC 2 cut(s) 359, 1182
BslI CCNNNNNNNGG 4 cut(s) 23, 107, 191, 278
BsmFI GGGAC 2 cut(s) 359, 1182
Bsp1286I GDGCHC 4 cut(s) 17, 101, 185, 1152
Bsp143I GATC 2 cut(s) 1021, 1105
Bsp19I CCATGG 1 cut(s) 1025
BspCNI CTCAG 5 cut(s) 31, 115, 199, 286, 367
BspLI GGNNCC 1 cut(s) 487
BspPI GGATC 2 cut(s) 1016, 1100
BspT107I GGYRCC 1 cut(s) 485
BsrI ACTGG 2 cut(s) 436, 565
BssECI CCNNGG 3 cut(s) 903, 1025, 1109
BssMI GATC 2 cut(s) 1021, 1105
BssT1I CCWWGG 2 cut(s) 1025, 1109
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 4 cut(s) 59, 143, 230, 311
BstAPI GCANNNNNTGC 2 cut(s) 1016, 1100
BstDEI CTNAG 5 cut(s) 18, 102, 186, 273, 354
BstDSI CCRYGG 1 cut(s) 1025
BstF5I GGATG 1 cut(s) 760
BstKTI GATC 2 cut(s) 1024, 1108
BstMBI GATC 2 cut(s) 1021, 1105
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 3 cut(s) 88, 172, 259
BstPAI GACNNNNGTC 3 cut(s) 85, 169, 256
BstSCI CCNGG 1 cut(s) 902
BstSLI GKGCMC 3 cut(s) 17, 101, 185
BstV1I GCAGC 8 cut(s) 482, 611, 663, 683, 743, 806, 887, 968
Bsu36I CCTNAGG 4 cut(s) 18, 102, 186, 273
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 1 cut(s) 760
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 3 cut(s) 118, 399, 528
Cfr13I GGNCC 2 cut(s) 587, 659
Csp6I GTAC 7 cut(s) 429, 486, 558, 615, 687, 810, 891
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 7 cut(s) 85, 169, 256, 337, 408, 537, 1026
CviQI GTAC 7 cut(s) 429, 486, 558, 615, 687, 810, 891
DdeI CTNAG 5 cut(s) 18, 102, 186, 273, 354
DpnI GATC 2 cut(s) 1023, 1107
DpnII GATC 2 cut(s) 1021, 1105
EciI GGCGGA 6 cut(s) 648, 720, 945, 1008, 1083, 1092
Eco130I CCWWGG 2 cut(s) 1025, 1109
Eco47I GGWCC 2 cut(s) 587, 659
Eco81I CCTNAGG 4 cut(s) 18, 102, 186, 273
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 1025, 1109
ErhI CCWWGG 2 cut(s) 1025, 1109
FaeI CATG 7 cut(s) 88, 172, 259, 340, 411, 540, 1029
FaiI YATR 9 cut(s) 86, 170, 257, 338, 372, 409, 538, 774, 1027
FaqI GGGAC 2 cut(s) 359, 1182
FatI CATG 7 cut(s) 84, 168, 255, 336, 407, 536, 1025
FblI GTMKAC 1 cut(s) 1140
FokI GGATG 1 cut(s) 767
FspBI CTAG 6 cut(s) 90, 174, 261, 342, 855, 1083
GsaI CCCAGC 1 cut(s) 1169
GsuI CTGGAG 3 cut(s) 150, 453, 582
Hin1II CATG 7 cut(s) 88, 172, 259, 340, 411, 540, 1029
HindIII AAGCTT 1 cut(s) 736
HinfI GANTC 6 cut(s) 74, 158, 245, 326, 404, 533
Hpy166II GTNNAC 5 cut(s) 399, 587, 659, 770, 1141
Hpy188I TCNGA 1 cut(s) 1187
Hpy188III TCNNGA 4 cut(s) 78, 162, 249, 330
Hpy8I GTNNAC 5 cut(s) 399, 587, 659, 770, 1141
HpyCH4III ACNGT 4 cut(s) 59, 143, 230, 311
HpyF3I CTNAG 5 cut(s) 18, 102, 186, 273, 354
Hsp92II CATG 7 cut(s) 88, 172, 259, 340, 411, 540, 1029
KpnI GGTACC 1 cut(s) 489
Kzo9I GATC 2 cut(s) 1021, 1105
Lsp1109I GCAGC 8 cut(s) 482, 611, 663, 683, 743, 806, 887, 968
MaeI CTAG 6 cut(s) 90, 174, 261, 342, 855, 1083
MaeIII GTNAC 2 cut(s) 53, 143
MalI GATC 2 cut(s) 1023, 1107
MboI GATC 2 cut(s) 1021, 1105
MhlI GDGCHC 4 cut(s) 17, 101, 185, 1152
MluCI AATT 1 cut(s) 1175
MlyI GAGTC 4 cut(s) 83, 167, 254, 335
MroXI GAANNNNTTC 2 cut(s) 230, 311
MslI CAYNNNNRTG 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 654
MspR9I CCNGG 1 cut(s) 904
MvaI CCWGG 1 cut(s) 904
NcoI CCATGG 1 cut(s) 1025
NdeII GATC 2 cut(s) 1021, 1105
NlaIII CATG 7 cut(s) 88, 172, 259, 340, 411, 540, 1029
NlaIV GGNNCC 1 cut(s) 487
NspI RCATGY 3 cut(s) 88, 172, 259
PciI ACATGT 3 cut(s) 84, 168, 255
PdmI GAANNNNTTC 2 cut(s) 230, 311
PfeI GAWTC 2 cut(s) 404, 533
PleI GAGTC 4 cut(s) 82, 166, 253, 334
PpsI GAGTC 4 cut(s) 82, 166, 253, 334
PscI ACATGT 3 cut(s) 84, 168, 255
PshAI GACNNNNGTC 3 cut(s) 85, 169, 256
Psp6I CCWGG 1 cut(s) 902
PspFI CCCAGC 1 cut(s) 1165
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 2 cut(s) 587, 659
RsaI GTAC 7 cut(s) 430, 487, 559, 616, 688, 811, 892
RsaNI GTAC 7 cut(s) 429, 486, 558, 615, 687, 810, 891
RseI CAYNNNNRTG 1 cut(s) 777
Sau3AI GATC 2 cut(s) 1021, 1105
Sau96I GGNCC 2 cut(s) 587, 659
SchI GAGTC 4 cut(s) 83, 167, 254, 335
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 4 cut(s) 17, 101, 185, 1152
SinI GGWCC 2 cut(s) 587, 659
SmiMI CAYNNNNRTG 1 cut(s) 777
Sse9I AATT 1 cut(s) 1175
SspMI CTAG 6 cut(s) 90, 174, 261, 342, 855, 1083
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 2 cut(s) 1025, 1109
TaaI ACNGT 4 cut(s) 59, 143, 230, 311
TasI AATT 1 cut(s) 1175
TauI GCSGC 5 cut(s) 27, 111, 195, 198, 282
TfiI GAWTC 2 cut(s) 404, 533
TscAI CASTG 3 cut(s) 118, 406, 535
TseI GCWGC 8 cut(s) 470, 599, 651, 671, 731, 794, 875, 956
TspDTI ATGAA 3 cut(s) 396, 525, 795
TspRI CASTG 3 cut(s) 118, 406, 535
VpaK11BI GGWCC 2 cut(s) 587, 659
XapI RAATTY 1 cut(s) 1175
XceI RCATGY 3 cut(s) 88, 172, 259
XmiI GTMKAC 1 cut(s) 1140
XmnI GAANNNNTTC 2 cut(s) 230, 311
XspI CTAG 6 cut(s) 90, 174, 261, 342, 855, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.