Rh1DG298200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0022583
Physical Location & Seq
Reverse (-)
52370915 .. 52372064
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG298200.1

Sequence Viewer

Length: 942 bp
ATGTCTAGGGAGTGCCCTCAGGGCGGCGGTGGTGGTAGAGGGAGTGGGGGTGGGAACTGTTTCAAATGTGGTGAGTCTGGACACATGTCTAGGGAGTGTCCTCAGGGCGGCGGTGGTAGAGGGGCTGGAAGTGGGAACTGTTTCAAGTGTGGTGAGTCTGGACACATGGCTAGGGACTGCTCTCAGGGAGGTGGTAGCTATGGCAACTTCGGTGGTGGAGCAAAGTCCACTGATTCATGGAGCAAGCGTGCTTGGGGTACTGGAGATGGTGGAAGTGGCGGTGATGGAGCAAAACCAGCAGCAAGCTCTTGGGGTACCACAGGTGGTGGAGCAAAGCCCACTGATTCATGGAGCAAGCGTGCTTGGGGTACTGGAGATGGTGGAAGTGGCAGTGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAGGAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGGTGGAACTGGCAGCGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAACCAGCAGCAAGCTCTTGGGGTAAGGGGGATGGTGGAAGTGGCGGACATAGTGATGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCTTGGGGTAAGGCAGATGGTGGAAGTGGCAGAGCTAGTGGTGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCCTGGGGTAAGGGAGATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAGCCTGCTGATCCATGGAGCAAGCCATCAGCAAGTGCTTGGGGTAAGGGAGATGGCGGAAGTGGCGGAGCTAGTGGTGAAGCAAAGCCTGCTGATCCATGGAGCAAGCCATCAGCAAATGCTTGGGGTAAGGGAGATGGTGGAAGTGGCAGCGGAGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

28.94

Weight (kDa)

8.94

Isoelectric Point (pI)

25.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 19 - 35 3.2e-07 Zinc knuckle
zf-CCHC PF00098 46 - 62 4.3e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022583)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0362231
rosa_samantha Rh1BG268100 Rh1CG286300 Rh1DG298200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AclWI GGATC 2 cut(s) 782, 866
AfaI GTAC 8 cut(s) 259, 316, 370, 427, 445, 517, 640, 721
AfiI CCNNNNNNNGG 2 cut(s) 23, 107
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 2 cut(s) 64, 145
AjnI CCWGG 1 cut(s) 731
AlwI GGATC 2 cut(s) 782, 866
ApeKI GCWGC 8 cut(s) 299, 410, 480, 500, 560, 623, 704, 927
Asp700I GAANNNNTTC 2 cut(s) 59, 140
Asp718I GGTACC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 398, 488
AsuHPI GGTGA 7 cut(s) 83, 164, 293, 557, 701, 782, 866
AvaII GGWCC 2 cut(s) 398, 488
AxyI CCTNAGG 2 cut(s) 18, 102
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 314
BbvI GCAGC 7 cut(s) 311, 422, 492, 512, 572, 635, 716
BciT130I CCWGG 1 cut(s) 733
BfaI CTAG 5 cut(s) 6, 90, 171, 684, 849
BglI GCCNNNNNGGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 733
Bme18I GGWCC 2 cut(s) 398, 488
BmgT120I GGNCC 2 cut(s) 398, 488
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 733
BoxI GACNNNNGTC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 282, 393
BsaJI CCNNGG 3 cut(s) 732, 791, 875
BsaXI ACNNNNNCTCC 6 cut(s) 34, 64, 232, 262, 343, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 107
Bse1I ACTGG 3 cut(s) 265, 376, 481
Bse21I CCTNAGG 2 cut(s) 18, 102
BseBI CCWGG 1 cut(s) 733
BseDI CCNNGG 3 cut(s) 732, 791, 875
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 2 cut(s) 23, 107
BseMII CTCAG 3 cut(s) 32, 116, 197
BseNI ACTGG 3 cut(s) 265, 376, 481
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 7 cut(s) 311, 422, 492, 512, 572, 635, 716
BshNI GGYRCC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 23, 107
BsmFI GGGAC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 787, 871
Bsp19I CCATGG 2 cut(s) 791, 875
BspCNI CTCAG 3 cut(s) 31, 115, 196
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 2 cut(s) 782, 866
BspT107I GGYRCC 1 cut(s) 314
BsrI ACTGG 3 cut(s) 265, 376, 481
BssECI CCNNGG 3 cut(s) 732, 791, 875
BssMI GATC 2 cut(s) 787, 871
BssT1I CCWWGG 2 cut(s) 791, 875
Bst2UI CCWGG 1 cut(s) 733
Bst4CI ACNGT 2 cut(s) 59, 140
BstAPI GCANNNNNTGC 2 cut(s) 782, 866
BstDEI CTNAG 3 cut(s) 18, 102, 183
BstDSI CCRYGG 2 cut(s) 791, 875
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 2 cut(s) 790, 874
BstMBI GATC 2 cut(s) 787, 871
BstMWI GCNNNNNNNGC 8 cut(s) 21, 296, 557, 620, 701, 782, 840, 866
BstNI CCWGG 1 cut(s) 733
BstNSI RCATGY 1 cut(s) 88
BstPAI GACNNNNGTC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 731
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 7 cut(s) 311, 422, 492, 512, 572, 635, 716
Bsu36I CCTNAGG 2 cut(s) 18, 102
BtgI CCRYGG 2 cut(s) 791, 875
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 3 cut(s) 228, 339, 397
Cfr13I GGNCC 2 cut(s) 398, 488
Csp6I GTAC 8 cut(s) 258, 315, 369, 426, 444, 516, 639, 720
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 6 cut(s) 85, 166, 237, 348, 792, 876
CviQI GTAC 8 cut(s) 258, 315, 369, 426, 444, 516, 639, 720
DdeI CTNAG 3 cut(s) 18, 102, 183
DpnI GATC 2 cut(s) 789, 873
DpnII GATC 2 cut(s) 787, 871
EciI GGCGGA 6 cut(s) 477, 549, 612, 774, 849, 858
Eco130I CCWWGG 2 cut(s) 791, 875
Eco47I GGWCC 2 cut(s) 398, 488
Eco81I CCTNAGG 2 cut(s) 18, 102
EcoRII CCWGG 1 cut(s) 731
EcoT14I CCWWGG 2 cut(s) 791, 875
ErhI CCWWGG 2 cut(s) 791, 875
FaeI CATG 6 cut(s) 88, 169, 240, 351, 795, 879
FaiI YATR 8 cut(s) 86, 167, 201, 238, 349, 603, 793, 877
FaqI GGGAC 1 cut(s) 188
FatI CATG 6 cut(s) 84, 165, 236, 347, 791, 875
FokI GGATG 1 cut(s) 596
FspBI CTAG 5 cut(s) 6, 90, 171, 684, 849
GsuI CTGGAG 2 cut(s) 282, 393
Hin1II CATG 6 cut(s) 88, 169, 240, 351, 795, 879
HinfI GANTC 4 cut(s) 74, 155, 233, 344
HphI GGTGA 7 cut(s) 83, 164, 293, 557, 701, 782, 866
Hpy166II GTNNAC 3 cut(s) 228, 398, 488
Hpy188III TCNNGA 2 cut(s) 78, 159
Hpy8I GTNNAC 3 cut(s) 228, 398, 488
HpyCH4III ACNGT 2 cut(s) 59, 140
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 296, 557, 620, 701, 782, 840, 866
HpyF3I CTNAG 3 cut(s) 18, 102, 183
Hsp92II CATG 6 cut(s) 88, 169, 240, 351, 795, 879
KpnI GGTACC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 787, 871
Lsp1109I GCAGC 7 cut(s) 311, 422, 492, 512, 572, 635, 716
MaeI CTAG 5 cut(s) 6, 90, 171, 684, 849
MalI GATC 2 cut(s) 789, 873
MboI GATC 2 cut(s) 787, 871
MhlI GDGCHC 1 cut(s) 17
MlyI GAGTC 2 cut(s) 83, 164
MnlI CCTC 6 cut(s) 27, 32, 111, 113, 182, 926
MroXI GAANNNNTTC 2 cut(s) 59, 140
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 483, 930
MspR9I CCNGG 1 cut(s) 733
MvaI CCWGG 1 cut(s) 733
MwoI GCNNNNNNNGC 8 cut(s) 21, 296, 557, 620, 701, 782, 840, 866
NcoI CCATGG 2 cut(s) 791, 875
NdeII GATC 2 cut(s) 787, 871
NlaIII CATG 6 cut(s) 88, 169, 240, 351, 795, 879
NlaIV GGNNCC 1 cut(s) 316
NspI RCATGY 1 cut(s) 88
PciI ACATGT 1 cut(s) 84
PdmI GAANNNNTTC 2 cut(s) 59, 140
PfeI GAWTC 2 cut(s) 233, 344
PleI GAGTC 2 cut(s) 82, 163
PpsI GAGTC 2 cut(s) 82, 163
PscI ACATGT 1 cut(s) 84
PshAI GACNNNNGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 731
PspGI CCWGG 1 cut(s) 731
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 398, 488
RsaI GTAC 8 cut(s) 259, 316, 370, 427, 445, 517, 640, 721
RsaNI GTAC 8 cut(s) 258, 315, 369, 426, 444, 516, 639, 720
RseI CAYNNNNRTG 1 cut(s) 606
Sau3AI GATC 2 cut(s) 787, 871
Sau96I GGNCC 2 cut(s) 398, 488
SchI GAGTC 2 cut(s) 83, 164
ScrFI CCNGG 1 cut(s) 733
SduI GDGCHC 1 cut(s) 17
SinI GGWCC 2 cut(s) 398, 488
SmiMI CAYNNNNRTG 1 cut(s) 606
SspMI CTAG 5 cut(s) 6, 90, 171, 684, 849
StyD4I CCNGG 1 cut(s) 731
StyI CCWWGG 2 cut(s) 791, 875
TaaI ACNGT 2 cut(s) 59, 140
TauI GCSGC 2 cut(s) 27, 111
TfiI GAWTC 2 cut(s) 233, 344
TscAI CASTG 3 cut(s) 235, 346, 397
TseI GCWGC 8 cut(s) 299, 410, 480, 500, 560, 623, 704, 927
TspDTI ATGAA 3 cut(s) 225, 336, 624
TspRI CASTG 3 cut(s) 235, 346, 397
VpaK11BI GGWCC 2 cut(s) 398, 488
XceI RCATGY 1 cut(s) 88
XmnI GAANNNNTTC 2 cut(s) 59, 140
XspI CTAG 5 cut(s) 6, 90, 171, 684, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.