Rh1BG268100

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0022583
Physical Location & Seq
Reverse (-)
40206804 .. 40208341
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG268100.1

Sequence Viewer

Length: 1275 bp
ATGTCTAGGGAGTGCCCTCAGGGTGGTGGTGGTGGTGGTGGTAGAGGGGGGAACTGTTACAAGTGTGGTGAATCTGGACACATGTCTAGGGAGTGCCCTCAGGGCGGAGGTGGTGGTAGAGGGGGTGGAGGTGGTAACTGTTTCAAGTGCGGTGAATCTGGACATATGTCAAGGGAGTGCCCTCAGGGCGGCGGTGGTGGTAGAGGGGCAGGAGGTGGTAACTGTTTCAAGTGCGGTGAGTCTGGACATATGTCAAGAGAGTGCCCTCAGGGTGGCGGTGGTGGTAGAGGGGCTGGAGGTGGGAACTGTTACAAGTGTGGTGAGTCTGGACACATGTCTAGGGAGTGCCCTCAGGGCGGCGGTGGTGGTAGAGGGAGTGGGGGTGGGAACTGTTTCAAATGTGGTGAGTCTGGACACATGTCTAGGGAGTGTCCTCAGGGCGGCGGTGGTAGAGGGGCTGGAAGTGGGAACTGTTTCAAGTGTGGTGAGTCTGGACACATGGCTAGGGACTGCTCTCAGGGAGGTGGTAGCTATGGCAACTTCGGTGGTGGAGCAAAGTCCACTGATTCATGGAGCAAGCGTGCTTGGGGTACTGGAGATGGTGGAAGTGGCGGTGATGGAGCAAAACCAGCAGCAAGCTCTTGGGGTACCACAGGTGGTGGAGCAAAGCCCACTGATTCATGGAGCAAGCGTGCTTGGGGTACTGGAGATGGTGGAAGTGGCAGTGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAGGAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGGTGGAACTGGCAGCGGTGGACCAAAACCAGCAGCAAGCTCTTGGGGTACAAATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAACCAGCAGCAAGCTCTTGGGGTAAGGGGGATGGTGGAAGTGGCGGACATAGTGATGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCTTGGGGTAAGGCAGATGGTGGAAGTGGCAGAGCTAGTGGTGAAGCAAAACCAGCAGCAAGCACTTGGGGTACAGGAAGCTCCTGGGGTAAGGGAGATGGTGGAAGTGGCGGAGCTGGTGGTGAAGCAAAGCCTGCTGATCCATGGAGCAAGCCATCAGCAAGTGCTTGGGGTAAGGGAGATGGCGGAAGTGGCGGAGCTAGTGGTGAAGCAAAGCCTGCTGATCCATGGAGCAAGCCATCAGCAAATGCTTGGGGTAAGGGAGATGGTGGAAGTGGCAGCGGAGGGTGGTGA

Protein Analysis

424

Amino Acids

39.43

Weight (kDa)

8.8

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 18 - 34 2.4e-07 Zinc knuckle
zf-CCHC PF00098 46 - 62 4.7e-07 Zinc knuckle
zf-CCHC PF00098 74 - 90 4.7e-07 Zinc knuckle
zf-CCHC PF00098 102 - 118 2.4e-07 Zinc knuckle
zf-CCHC PF00098 130 - 146 4.7e-07 Zinc knuckle
zf-CCHC PF00098 157 - 173 6.2e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022583)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0362231
rosa_samantha Rh1BG268100 Rh1CG286300 Rh1DG298200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 647
AclWI GGATC 2 cut(s) 1115, 1199
AfaI GTAC 8 cut(s) 592, 649, 703, 760, 778, 850, 973, 1054
AfiI CCNNNNNNNGG 6 cut(s) 23, 104, 188, 272, 356, 440
AflIII ACRYGT 3 cut(s) 81, 333, 417
AgsI TTSAA 4 cut(s) 145, 229, 397, 478
AjnI CCWGG 1 cut(s) 1064
AlwI GGATC 2 cut(s) 1115, 1199
ApeKI GCWGC 8 cut(s) 632, 743, 813, 833, 893, 956, 1037, 1260
Asp700I GAANNNNTTC 2 cut(s) 392, 473
Asp718I GGTACC 1 cut(s) 647
AspS9I GGNCC 2 cut(s) 731, 821
AvaII GGWCC 2 cut(s) 731, 821
AxyI CCTNAGG 6 cut(s) 18, 99, 183, 267, 351, 435
BaeGI GKGCMC 5 cut(s) 17, 98, 182, 266, 350
BanI GGYRCC 1 cut(s) 647
BbvI GCAGC 7 cut(s) 644, 755, 825, 845, 905, 968, 1049
BciT130I CCWGG 1 cut(s) 1066
BfaI CTAG 7 cut(s) 6, 87, 339, 423, 504, 1017, 1182
BglI GCCNNNNNGGC 3 cut(s) 102, 186, 354
Bme1390I CCNGG 1 cut(s) 1066
Bme18I GGWCC 2 cut(s) 731, 821
BmgT120I GGNCC 2 cut(s) 731, 821
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 1066
BoxI GACNNNNGTC 5 cut(s) 82, 166, 250, 334, 418
BpmI CTGGAG 3 cut(s) 315, 615, 726
BsaJI CCNNGG 3 cut(s) 1065, 1124, 1208
BsaXI ACNNNNNCTCC 6 cut(s) 367, 397, 565, 595, 676, 706
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 104, 188, 272, 356, 440
Bse1I ACTGG 3 cut(s) 598, 709, 814
Bse21I CCTNAGG 6 cut(s) 18, 99, 183, 267, 351, 435
BseBI CCWGG 1 cut(s) 1066
BseDI CCNNGG 3 cut(s) 1065, 1124, 1208
BseGI GGATG 1 cut(s) 922
BseLI CCNNNNNNNGG 6 cut(s) 23, 104, 188, 272, 356, 440
BseMII CTCAG 7 cut(s) 32, 113, 197, 281, 365, 449, 530
BseNI ACTGG 3 cut(s) 598, 709, 814
BseSI GKGCMC 5 cut(s) 17, 98, 182, 266, 350
BseXI GCAGC 7 cut(s) 644, 755, 825, 845, 905, 968, 1049
BshNI GGYRCC 1 cut(s) 647
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 6 cut(s) 23, 104, 188, 272, 356, 440
BsmFI GGGAC 1 cut(s) 521
Bsp1286I GDGCHC 5 cut(s) 17, 98, 182, 266, 350
Bsp143I GATC 2 cut(s) 1120, 1204
Bsp19I CCATGG 2 cut(s) 1124, 1208
BspCNI CTCAG 7 cut(s) 31, 112, 196, 280, 364, 448, 529
BspLI GGNNCC 1 cut(s) 649
BspPI GGATC 2 cut(s) 1115, 1199
BspT107I GGYRCC 1 cut(s) 647
BsrI ACTGG 3 cut(s) 598, 709, 814
BssECI CCNNGG 3 cut(s) 1065, 1124, 1208
BssMI GATC 2 cut(s) 1120, 1204
BssT1I CCWWGG 2 cut(s) 1124, 1208
Bst2UI CCWGG 1 cut(s) 1066
Bst4CI ACNGT 6 cut(s) 56, 140, 224, 308, 392, 473
BstAPI GCANNNNNTGC 2 cut(s) 1115, 1199
BstDEI CTNAG 7 cut(s) 18, 99, 183, 267, 351, 435, 516
BstDSI CCRYGG 2 cut(s) 1124, 1208
BstF5I GGATG 1 cut(s) 922
BstKTI GATC 2 cut(s) 1123, 1207
BstMBI GATC 2 cut(s) 1120, 1204
BstNI CCWGG 1 cut(s) 1066
BstNSI RCATGY 3 cut(s) 85, 337, 421
BstPAI GACNNNNGTC 5 cut(s) 82, 166, 250, 334, 418
BstSCI CCNGG 1 cut(s) 1064
BstSLI GKGCMC 5 cut(s) 17, 98, 182, 266, 350
BstV1I GCAGC 7 cut(s) 644, 755, 825, 845, 905, 968, 1049
Bsu36I CCTNAGG 6 cut(s) 18, 99, 183, 267, 351, 435
BtgI CCRYGG 2 cut(s) 1124, 1208
BtsCI GGATG 1 cut(s) 922
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 3 cut(s) 561, 672, 730
Cfr13I GGNCC 2 cut(s) 731, 821
Csp6I GTAC 8 cut(s) 591, 648, 702, 759, 777, 849, 972, 1053
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 8 cut(s) 82, 334, 418, 499, 570, 681, 1125, 1209
CviQI GTAC 8 cut(s) 591, 648, 702, 759, 777, 849, 972, 1053
DdeI CTNAG 7 cut(s) 18, 99, 183, 267, 351, 435, 516
DpnI GATC 2 cut(s) 1122, 1206
DpnII GATC 2 cut(s) 1120, 1204
EciI GGCGGA 7 cut(s) 120, 810, 882, 945, 1107, 1182, 1191
Eco130I CCWWGG 2 cut(s) 1124, 1208
Eco47I GGWCC 2 cut(s) 731, 821
Eco81I CCTNAGG 6 cut(s) 18, 99, 183, 267, 351, 435
EcoRII CCWGG 1 cut(s) 1064
EcoT14I CCWWGG 2 cut(s) 1124, 1208
ErhI CCWWGG 2 cut(s) 1124, 1208
FaeI CATG 8 cut(s) 85, 337, 421, 502, 573, 684, 1128, 1212
FaqI GGGAC 1 cut(s) 521
FatI CATG 8 cut(s) 81, 333, 417, 498, 569, 680, 1124, 1208
FauNDI CATATG 2 cut(s) 165, 249
FokI GGATG 1 cut(s) 929
FspBI CTAG 7 cut(s) 6, 87, 339, 423, 504, 1017, 1182
GsuI CTGGAG 3 cut(s) 315, 615, 726
Hin1II CATG 8 cut(s) 85, 337, 421, 502, 573, 684, 1128, 1212
HinfI GANTC 8 cut(s) 71, 155, 239, 323, 407, 488, 566, 677
Hpy166II GTNNAC 3 cut(s) 561, 731, 821
Hpy188III TCNNGA 7 cut(s) 75, 159, 243, 255, 327, 411, 492
Hpy8I GTNNAC 3 cut(s) 561, 731, 821
HpyCH4III ACNGT 6 cut(s) 56, 140, 224, 308, 392, 473
HpyF3I CTNAG 7 cut(s) 18, 99, 183, 267, 351, 435, 516
Hsp92II CATG 8 cut(s) 85, 337, 421, 502, 573, 684, 1128, 1212
KpnI GGTACC 1 cut(s) 651
Kzo9I GATC 2 cut(s) 1120, 1204
Lsp1109I GCAGC 7 cut(s) 644, 755, 825, 845, 905, 968, 1049
MaeI CTAG 7 cut(s) 6, 87, 339, 423, 504, 1017, 1182
MaeIII GTNAC 4 cut(s) 56, 134, 218, 308
MalI GATC 2 cut(s) 1122, 1206
MboI GATC 2 cut(s) 1120, 1204
MhlI GDGCHC 5 cut(s) 17, 98, 182, 266, 350
MlyI GAGTC 4 cut(s) 248, 332, 416, 497
MroXI GAANNNNTTC 2 cut(s) 392, 473
MslI CAYNNNNRTG 1 cut(s) 939
MspA1I CMGCKG 2 cut(s) 816, 1263
MspR9I CCNGG 1 cut(s) 1066
MvaI CCWGG 1 cut(s) 1066
NcoI CCATGG 2 cut(s) 1124, 1208
NdeI CATATG 2 cut(s) 165, 249
NdeII GATC 2 cut(s) 1120, 1204
NlaIII CATG 8 cut(s) 85, 337, 421, 502, 573, 684, 1128, 1212
NlaIV GGNNCC 1 cut(s) 649
NspI RCATGY 3 cut(s) 85, 337, 421
PciI ACATGT 3 cut(s) 81, 333, 417
PdmI GAANNNNTTC 2 cut(s) 392, 473
PfeI GAWTC 4 cut(s) 71, 155, 566, 677
PleI GAGTC 4 cut(s) 247, 331, 415, 496
PpsI GAGTC 4 cut(s) 247, 331, 415, 496
PscI ACATGT 3 cut(s) 81, 333, 417
PshAI GACNNNNGTC 5 cut(s) 82, 166, 250, 334, 418
Psp6I CCWGG 1 cut(s) 1064
PspGI CCWGG 1 cut(s) 1064
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 2 cut(s) 731, 821
RsaI GTAC 8 cut(s) 592, 649, 703, 760, 778, 850, 973, 1054
RsaNI GTAC 8 cut(s) 591, 648, 702, 759, 777, 849, 972, 1053
RseI CAYNNNNRTG 1 cut(s) 939
Sau3AI GATC 2 cut(s) 1120, 1204
Sau96I GGNCC 2 cut(s) 731, 821
SchI GAGTC 4 cut(s) 248, 332, 416, 497
ScrFI CCNGG 1 cut(s) 1066
SduI GDGCHC 5 cut(s) 17, 98, 182, 266, 350
SinI GGWCC 2 cut(s) 731, 821
SmiMI CAYNNNNRTG 1 cut(s) 939
SspMI CTAG 7 cut(s) 6, 87, 339, 423, 504, 1017, 1182
StyD4I CCNGG 1 cut(s) 1064
StyI CCWWGG 2 cut(s) 1124, 1208
TaaI ACNGT 6 cut(s) 56, 140, 224, 308, 392, 473
TauI GCSGC 3 cut(s) 192, 360, 444
TfiI GAWTC 4 cut(s) 71, 155, 566, 677
TscAI CASTG 3 cut(s) 568, 679, 730
TseI GCWGC 8 cut(s) 632, 743, 813, 833, 893, 956, 1037, 1260
TspDTI ATGAA 3 cut(s) 558, 669, 957
TspRI CASTG 3 cut(s) 568, 679, 730
VpaK11BI GGWCC 2 cut(s) 731, 821
XceI RCATGY 3 cut(s) 85, 337, 421
XmnI GAANNNNTTC 2 cut(s) 392, 473
XspI CTAG 7 cut(s) 6, 87, 339, 423, 504, 1017, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.