Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022626

Physical Location & Seq

Genomic Coordinates Forward (+)

60031408 .. 60032742

Gene Structure 1335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCATTACAGCCCAACCATTGTTCAGTTTGCTGGATTTGCTTCCAACCAAACAGCTTTAGCACTTTCTCTCATCACTTCCGGTCTCAATGTTATTGGCACTGTAATCAGTATGCGCTTTGTGGATAGATATGGAAGGAGAAAGCTCATGATCATTTCTATGGTTGGGATTATCACTTGTCTGGTGGTGTTACCTGTGGTCTTTTTCCAGGCAGCAGCTCACGCTCCTCGTATTGGCAATTTGGAATCAACTCATTTTGGTAGTAACTCCACATGTCCAGCTTATGTGTCTGCCCCTAATCCAGCCTCATGGTACTGCATGACATGTTTGAAAGCTCAGTGCGGCTTCTGTGCTAATTGTGTCTCGGCTTATGCCCCGGGAGCGTGCGTGGCTTCGAATGATGGCTTGAAAAAGGCATGTGCCGGAGAACATTGTGTATGGTATACAAAAGGGTGTCCAAGCAAAGTTGGATTCTTTGCAGTAATCCTTTTGGGATTGTACATCATTATCTACGCCCTTGGAATGGGAACTAAACCGTGGATTGTGAACTCGGAGATATACCCTTTGAGATTCAGAGGCACATGTGGAGCCGTGGAGGGATTGCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

203

Amino Acids

21.72

Weight (kDa)

8.95

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 72	1.4e-11	Sugar (and other) transporter
MFS_1	PF07690	4 - 70	3.3e-06	Major Facilitator Superfamily
Sugar_tr	PF00083	151 - 198	4.5e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370521
rosa_multiflora	Rmu_sc0000526.1_g000003
rosa_samantha	Rh7AG111400 Rh7CG116200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	443
AciI	CCGC	1 cut(s)	342
AfaI	GTAC	2 cut(s)	314, 500
AfiI	CCNNNNNNNGG	2 cut(s)	233, 523
AflIII	ACRYGT	3 cut(s)	272, 323, 581
AgsI	TTSAA	2 cut(s)	331, 409
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	56, 145, 218, 281, 335
AluI	AGCT	5 cut(s)	56, 145, 218, 281, 335
Alw26I	GTCTC	2 cut(s)	89, 367
Ama87I	CYCGRG	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	212, 215, 604
AspLEI	GCGC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	377, 378
AsuII	TTCGAA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	376
BbvI	GCAGC	3 cut(s)	224, 227, 591
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	575
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	2 cut(s)	377, 378
BcoDI	GTCTC	2 cut(s)	89, 367
BfmI	CTRYAG	1 cut(s)	605
BisI	GCNGC	4 cut(s)	213, 216, 343, 605
BlsI	GCNGC	4 cut(s)	214, 217, 344, 606
Bme1390I	CCNGG	3 cut(s)	209, 377, 378
BmeT110I	CYCGRG	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	3 cut(s)	209, 377, 378
Bpu14I	TTCGAA	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	377, 378
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	375, 376, 517, 536, 591
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 523
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	5 cut(s)	375, 376, 517, 536, 591
BseLI	CCNNNNNNNGG	2 cut(s)	233, 523
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	224, 227, 591
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	81, 377, 423
BslI	CCNNNNNNNGG	2 cut(s)	233, 523
BsmAI	GTCTC	2 cut(s)	89, 367
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	589
BspMAI	CTGCAG	1 cut(s)	609
BspT104I	TTCGAA	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	498
BssECI	CCNNGG	5 cut(s)	375, 376, 517, 536, 591
BssMI	GATC	1 cut(s)	150
BssNAI	GTATAC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	517
Bst1107I	GTATAC	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	103, 537
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	2 cut(s)	536, 591
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	2 cut(s)	89, 367
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 221, 380, 389
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	4 cut(s)	276, 327, 420, 585
BstSCI	CCNGG	3 cut(s)	207, 375, 376
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	224, 227, 591
BstXI	CCANNNNNNTGG	1 cut(s)	309
BstZ17I	GTATAC	1 cut(s)	444
BtgI	CCRYGG	2 cut(s)	536, 591
BtsIMutI	CAGTG	2 cut(s)	99, 344
Cac8I	GCNNGC	1 cut(s)	385
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	117
Cfr9I	CCCGGG	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	313, 499
CviAII	CATG	7 cut(s)	148, 273, 309, 319, 324, 417, 582
CviQI	GTAC	2 cut(s)	313, 499
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	7 cut(s)	151, 276, 312, 322, 327, 420, 585
FatI	CATG	7 cut(s)	147, 272, 308, 318, 323, 416, 581
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	4 cut(s)	213, 216, 343, 605
Fsp4HI	GCNGC	4 cut(s)	213, 216, 343, 605
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	213, 216, 343, 605
HapII	CCGG	3 cut(s)	81, 377, 423
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	7 cut(s)	151, 276, 312, 322, 327, 420, 585
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	245, 471, 570
HpaII	CCGG	3 cut(s)	81, 377, 423
Hpy166II	GTNNAC	2 cut(s)	444, 547
Hpy188I	TCNGA	2 cut(s)	553, 575
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	444, 547
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	2 cut(s)	103, 537
HpyCH4V	TGCA	4 cut(s)	4, 318, 479, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 221, 380, 389
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	7 cut(s)	151, 276, 312, 322, 327, 420, 585
HspAI	GCGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	3 cut(s)	229, 380, 587
Lsp1109I	GCAGC	3 cut(s)	224, 227, 591
MaeIII	GTNAC	2 cut(s)	189, 263
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MluCI	AATT	2 cut(s)	238, 355
MmeI	TCCRAC	2 cut(s)	69, 448
MnlI	CCTC	4 cut(s)	237, 316, 569, 589
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	3 cut(s)	81, 377, 423
MspR9I	CCNGG	3 cut(s)	209, 377, 378
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	38, 221, 380, 389
NciI	CCSGG	2 cut(s)	377, 378
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	7 cut(s)	151, 276, 312, 322, 327, 420, 585
NlaIV	GGNNCC	1 cut(s)	589
NmeAIII	GCCGAG	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	276, 327, 420, 585
NspV	TTCGAA	1 cut(s)	395
PagI	TCATGA	1 cut(s)	147
PciI	ACATGT	3 cut(s)	272, 323, 581
PfeI	GAWTC	3 cut(s)	245, 471, 570
PkrI	GCNGC	4 cut(s)	214, 217, 344, 606
PscI	ACATGT	3 cut(s)	272, 323, 581
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	609
RsaI	GTAC	2 cut(s)	314, 500
RsaNI	GTAC	2 cut(s)	313, 499
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	4 cut(s)	213, 216, 343, 605
Sau3AI	GATC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	209, 377, 378
SetI	ASST	6 cut(s)	58, 147, 196, 220, 283, 337
SfcI	CTRYAG	1 cut(s)	605
SfuI	TTCGAA	1 cut(s)	395
SmaI	CCCGGG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	238, 355
SsiI	CCGC	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	207, 375, 376
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	103, 537
TaqI	TCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	238, 355
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	245, 471, 570
TscAI	CASTG	2 cut(s)	106, 344
TseI	GCWGC	3 cut(s)	212, 215, 604
TspMI	CCCGGG	1 cut(s)	376
TspRI	CASTG	2 cut(s)	106, 344
XceI	RCATGY	4 cut(s)	276, 327, 420, 585
XmaI	CCCGGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.