Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000526.1

Orthogroup ID

OG0022626

Physical Location & Seq

Genomic Coordinates Reverse (-)

12453 .. 12964

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000526.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgggtgcattcagcaaccctgtggttcgaagaggactctatgcaggcataacagtccaggtagttcagcaatttgtaggtatcaacactgtcatgtattacatcccaaccattgttcagtttgctggattttcttccaaccaaacgtctttagcactttgtctcaacatttctggtcttaatgttgttggcactgcagcagctcacgctcctcgtattagtaatttggaatcaactcattttggtagtaactctacatgtccggcttatgtgtctgtcgtccctaatccagcctcatggaactgcatgacatgtttgaaagctcagtgcgacttctgtgctaatagtgttgcgctcatgcccagggagcatgagtggcttcgaatgatggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

131

Amino Acids

14.14

Weight (kDa)

8.28

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370521
rosa_multiflora	Rmu_sc0000526.1_g000003
rosa_samantha	Rh7AG111400 Rh7CG116200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	2 cut(s)	257, 311
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	57, 362
AluBI	AGCT	2 cut(s)	203, 323
AluI	AGCT	2 cut(s)	203, 323
Alw26I	GTCTC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	197, 200
AspLEI	GCGC	1 cut(s)	355
AsuII	TTCGAA	2 cut(s)	28, 382
BbvI	GCAGC	2 cut(s)	209, 212
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	2 cut(s)	59, 364
BcoDI	GTCTC	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	2 cut(s)	198, 201
BlsI	GCNGC	2 cut(s)	199, 202
Bme1390I	CCNGG	2 cut(s)	59, 364
BmrFI	CCNGG	2 cut(s)	59, 364
Bpu14I	TTCGAA	2 cut(s)	28, 382
BsaJI	CCNNGG	2 cut(s)	362, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
BseBI	CCWGG	2 cut(s)	59, 364
BseDI	CCNNGG	2 cut(s)	362, 363
BseGI	GGATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	209, 212
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	8
Bsp119I	TTCGAA	2 cut(s)	28, 382
BspCNI	CTCAG	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	199
BspT104I	TTCGAA	2 cut(s)	28, 382
BssECI	CCNNGG	2 cut(s)	362, 363
Bst2UI	CCWGG	2 cut(s)	59, 364
Bst4CI	ACNGT	2 cut(s)	55, 91
Bst6I	CTCTTC	1 cut(s)	25
BstBI	TTCGAA	2 cut(s)	28, 382
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 367, 376
BstNI	CCWGG	2 cut(s)	59, 364
BstNSI	RCATGY	2 cut(s)	261, 315
BstSCI	CCNGG	2 cut(s)	57, 362
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	209, 212
BstXI	CCANNNNNNTGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	3 cut(s)	87, 192, 332
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	355
CviAII	CATG	7 cut(s)	94, 258, 297, 307, 312, 358, 371
CviJI	RGCY	6 cut(s)	203, 266, 293, 323, 379, 392
CviKI_1	RGCY	6 cut(s)	203, 266, 293, 323, 379, 392
DdeI	CTNAG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	57, 362
FaeI	CATG	7 cut(s)	97, 261, 300, 310, 315, 361, 374
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	7 cut(s)	93, 257, 296, 306, 311, 357, 370
Fnu4HI	GCNGC	2 cut(s)	198, 201
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	198, 201
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	198, 201
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	7 cut(s)	97, 261, 300, 310, 315, 361, 374
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	2 cut(s)	36, 230
HpaII	CCGG	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	55, 91
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	4 cut(s)	8, 44, 197, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 367, 376
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	7 cut(s)	97, 261, 300, 310, 315, 361, 374
HspAI	GCGC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	214, 367
Lsp1109I	GCAGC	2 cut(s)	209, 212
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	42, 126
MluCI	AATT	2 cut(s)	71, 223
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	26, 222, 304
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	59, 364
Mva1269I	GAATGC	1 cut(s)	8
MvaI	CCWGG	2 cut(s)	59, 364
MwoI	GCNNNNNNNGC	3 cut(s)	206, 367, 376
NlaIII	CATG	7 cut(s)	97, 261, 300, 310, 315, 361, 374
NspI	RCATGY	2 cut(s)	261, 315
NspV	TTCGAA	2 cut(s)	28, 382
PasI	CCCWGGG	1 cut(s)	363
PciI	ACATGT	2 cut(s)	257, 311
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	199, 202
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PscI	ACATGT	2 cut(s)	257, 311
Psp6I	CCWGG	2 cut(s)	57, 362
PspGI	CCWGG	2 cut(s)	57, 362
PstI	CTGCAG	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	198, 201
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	59, 364
SetI	ASST	5 cut(s)	63, 82, 149, 205, 325
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	2 cut(s)	28, 382
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	71, 223
StyD4I	CCNGG	2 cut(s)	57, 362
TaaI	ACNGT	2 cut(s)	55, 91
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	28, 382
TasI	AATT	2 cut(s)	71, 223
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	94, 199, 332
TseI	GCWGC	2 cut(s)	197, 200
TspRI	CASTG	3 cut(s)	94, 199, 332
XceI	RCATGY	2 cut(s)	261, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.