Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0022626

Physical Location & Seq

Genomic Coordinates Forward (+)

8744210 .. 8744665

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG111400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTGGAATTATCACTTGCCTGGGGGTGTTATCTGTGGTGTTTTTCCAGGCGGCAGCTCACGCTCCTCGTATTAGTAATTTGGAATCAACTCATTTTGGTAGTAACTCTACATGTCCGGCTTATGTGTCTGTCCCTAATCCAGCCTCATGGAACTGCATGACACATTTGAAAGCTCAGTGCGACTTCTGTGCTAATAGTGTCGCGTCTCATGCCCCGAGAGCTTGCGTGGCTTCGAATGATGGCTTGAAAAAGGCGTGTGGCGGAAAACATCGTGTATGGTACACAAAAGGGTGTCCAAGCAAAGTTGGATTCATTGCAGTGATCCTTTTGGGATTGTACATCATTATCTACGCACCTGGGATGGGAACCGTACCGTGGATTGTGATTTGTGAACTCAGAGGTATACCCTTTGAGATACAGAGGCACATGTGGAGGGATTGCTGCAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

151

Amino Acids

16.29

Weight (kDa)

8.82

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370521
rosa_multiflora	Rmu_sc0000526.1_g000003
rosa_samantha	Rh7AG111400 Rh7CG116200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	53, 264
AclWI	GGATC	1 cut(s)	319
AfaI	GTAC	3 cut(s)	284, 341, 375
AfiI	CCNNNNNNNGG	2 cut(s)	365, 378
AflIII	ACRYGT	2 cut(s)	113, 429
AgsI	TTSAA	2 cut(s)	172, 250
AjnI	CCWGG	3 cut(s)	21, 48, 358
AluBI	AGCT	3 cut(s)	59, 176, 224
AluI	AGCT	3 cut(s)	59, 176, 224
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	56, 444
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	68, 431
BccI	CCATC	2 cut(s)	236, 358
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	3 cut(s)	23, 50, 360
BcoDI	GTCTC	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	3 cut(s)	54, 57, 445
BlsI	GCNGC	3 cut(s)	55, 58, 446
Bme1390I	CCNGG	3 cut(s)	23, 50, 360
BmeT110I	CYCGRG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	3 cut(s)	23, 50, 360
Bpu14I	TTCGAA	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	22, 359, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 378
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	3 cut(s)	23, 50, 360
BseDI	CCNNGG	3 cut(s)	22, 359, 377
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	365, 378
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	191, 412
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	68, 431
Bsh1236I	CGCG	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	365, 378
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	217
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	2 cut(s)	53, 264
BspCNI	CTCAG	2 cut(s)	190, 411
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	449
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	22, 359, 377
BssMI	GATC	1 cut(s)	324
BssNAI	GTATAC	1 cut(s)	407
Bst1107I	GTATAC	1 cut(s)	407
Bst2UI	CCWGG	3 cut(s)	23, 50, 360
Bst4CI	ACNGT	2 cut(s)	373, 378
BstAUI	TGTACA	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	177, 398
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 212, 221, 230, 450
BstNI	CCWGG	3 cut(s)	23, 50, 360
BstNSI	RCATGY	2 cut(s)	117, 433
BstSCI	CCNGG	3 cut(s)	21, 48, 358
BstSFI	CTRYAG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	68, 431
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstZ17I	GTATAC	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	2 cut(s)	327, 454
BtsIMutI	CAGTG	3 cut(s)	185, 327, 454
Cac8I	GCNNGC	1 cut(s)	226
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	283, 340, 374
CviAII	CATG	5 cut(s)	114, 150, 160, 212, 430
CviJI	RGCY	8 cut(s)	59, 122, 146, 176, 224, 233, 246, 453
CviKI_1	RGCY	8 cut(s)	59, 122, 146, 176, 224, 233, 246, 453
CviQI	GTAC	3 cut(s)	283, 340, 374
DdeI	CTNAG	2 cut(s)	177, 398
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	217
EcoRII	CCWGG	3 cut(s)	21, 48, 358
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	5 cut(s)	117, 153, 163, 215, 433
FaiI	YATR	8 cut(s)	115, 126, 151, 161, 213, 280, 407, 431
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	5 cut(s)	113, 149, 159, 211, 429
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	54, 57, 445
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	3 cut(s)	54, 57, 445
GluI	GCNGC	3 cut(s)	54, 57, 445
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	117, 153, 163, 215, 433
HinfI	GANTC	2 cut(s)	86, 312
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	285, 395, 407
Hpy188I	TCNGA	1 cut(s)	401
Hpy8I	GTNNAC	3 cut(s)	285, 395, 407
HpyCH4III	ACNGT	2 cut(s)	373, 378
HpyCH4V	TGCA	3 cut(s)	159, 320, 447
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 212, 221, 230, 450
HpyF3I	CTNAG	2 cut(s)	177, 398
Hsp92II	CATG	5 cut(s)	117, 153, 163, 215, 433
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	8, 35, 35, 62, 132, 156, 345, 372
Lsp1109I	GCAGC	2 cut(s)	68, 431
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MluCI	AATT	2 cut(s)	9, 79
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	78, 157, 395, 417, 429
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	3 cut(s)	23, 50, 360
MvaI	CCWGG	3 cut(s)	23, 50, 360
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	62, 212, 221, 230, 450
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	5 cut(s)	117, 153, 163, 215, 433
NlaIV	GGNNCC	1 cut(s)	370
NspI	RCATGY	2 cut(s)	117, 433
NspV	TTCGAA	1 cut(s)	236
PciI	ACATGT	2 cut(s)	113, 429
PfeI	GAWTC	2 cut(s)	86, 312
PkrI	GCNGC	3 cut(s)	55, 58, 446
PscI	ACATGT	2 cut(s)	113, 429
Psp6I	CCWGG	3 cut(s)	21, 48, 358
PspGI	CCWGG	3 cut(s)	21, 48, 358
PspN4I	GGNNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	449
RsaI	GTAC	3 cut(s)	284, 341, 375
RsaNI	GTAC	3 cut(s)	283, 340, 374
RseI	CAYNNNNRTG	1 cut(s)	320
SatI	GCNGC	3 cut(s)	54, 57, 445
Sau3AI	GATC	1 cut(s)	324
ScrFI	CCNGG	3 cut(s)	23, 50, 360
SetI	ASST	5 cut(s)	61, 178, 226, 361, 406
SfcI	CTRYAG	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	9, 79
SsiI	CCGC	2 cut(s)	53, 264
StyD4I	CCNGG	3 cut(s)	21, 48, 358
TaaI	ACNGT	2 cut(s)	373, 378
TaqI	TCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	9, 79
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	86, 312
TscAI	CASTG	3 cut(s)	185, 327, 454
TseI	GCWGC	2 cut(s)	56, 444
TspDTI	ATGAA	1 cut(s)	304
TspRI	CASTG	3 cut(s)	185, 327, 454
XceI	RCATGY	2 cut(s)	117, 433
XmiI	GTMKAC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.