Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0022626

Physical Location & Seq

Genomic Coordinates Forward (+)

8957468 .. 8958264

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG116200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAAGCATTGCATGAATCTGTCGAAATGGAAAAGGCTGAGGAAGGAGATGTTGGTGATGGCATCATAGCAAAACTAATGGGTGCATTCAGCAACCCTGTGGTTCGAAGAGGACTCTATGCAGGCATAACAGTCCAAGTAGTTCAGCAATTTGTGGGTATCAACACTGTCATGTATTACATCCCAACCATTGTTCAGTTTGCTGGATTTGCTTCCAACCAAACGGCTTTAGCACTTTGTCTCATCACTTCTGGTCTCAATGTTGTTGGCACTGCGGCAGCTCACGCTCCTCGTATTAGTAATTTGGAATCAACTCATTTTGGTAGTAACTCTACATGTCCGGCTTATGTGTCTGTCGTCCCTAATCCAGCCTCATGGAACTGCATGACATGTTTGAAAGCTCAGTGCGACTTCTGTGCTAATAGTGTCGCGGCTCATGCCCCGGGAGCTTGCGTGGCTTCGAATGATGGCTTGAAAAAGGCGTGTGGTGGAACACATCGTGTATGGTACACAAAAGGGTGTCCAAGCAAAGTTGGATTCATTGCAGTGATCCTTTTGGGATTGTACATCATTATCTACGCACCTGGGATGGGAACCGTACCGTGGATTGTGATTTGTGAACTCAGAGGTATACCCTTTGAGATACAGAGGCACATGTGGAGGGATTGCTGCAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

226

Amino Acids

24.05

Weight (kDa)

7.97

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	15 - 94	7.3e-10	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370521
rosa_multiflora	Rmu_sc0000526.1_g000003
rosa_samantha	Rh7AG111400 Rh7CG116200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	275, 431
AclWI	GGATC	1 cut(s)	544
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	509, 566, 600
AfiI	CCNNNNNNNGG	2 cut(s)	590, 603
AflIII	ACRYGT	3 cut(s)	335, 389, 654
AgsI	TTSAA	2 cut(s)	397, 475
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	3 cut(s)	281, 401, 449
AluI	AGCT	3 cut(s)	281, 401, 449
Alw26I	GTCTC	2 cut(s)	245, 260
AlwI	GGATC	1 cut(s)	544
Ama87I	CYCGRG	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	278, 669
AsuC2I	CCSGG	2 cut(s)	443, 444
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	2 cut(s)	106, 461
AvaI	CYCGRG	1 cut(s)	442
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	290, 656
BccI	CCATC	3 cut(s)	53, 461, 583
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	443, 444
BcoDI	GTCTC	2 cut(s)	245, 260
BfmI	CTRYAG	1 cut(s)	670
BisI	GCNGC	4 cut(s)	276, 279, 432, 670
BlsI	GCNGC	4 cut(s)	277, 280, 433, 671
Bme1390I	CCNGG	3 cut(s)	443, 444, 585
BmeT110I	CYCGRG	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	3 cut(s)	443, 444, 585
BmsI	GCATC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	2 cut(s)	106, 461
BpuMI	CCSGG	2 cut(s)	443, 444
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	441, 442, 584, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 603
Bse3DI	GCAATG	2 cut(s)	8, 540
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	441, 442, 584, 602
BseGI	GGATG	2 cut(s)	180, 594
BseLI	CCNNNNNNNGG	2 cut(s)	590, 603
BseMI	GCAATG	2 cut(s)	8, 540
BseMII	CTCAG	3 cut(s)	30, 416, 637
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	290, 656
Bsh1236I	CGCG	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	341, 443
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	590, 603
BsmAI	GTCTC	2 cut(s)	245, 260
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	442
Bsp119I	TTCGAA	2 cut(s)	106, 461
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	1 cut(s)	549
BspACI	CCGC	2 cut(s)	275, 431
BspCNI	CTCAG	3 cut(s)	31, 415, 636
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	1 cut(s)	544
BspT104I	TTCGAA	2 cut(s)	106, 461
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	8, 540
BsrGI	TGTACA	1 cut(s)	564
BssECI	CCNNGG	4 cut(s)	441, 442, 584, 602
BssMI	GATC	1 cut(s)	549
BssNAI	GTATAC	1 cut(s)	632
Bst1107I	GTATAC	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	4 cut(s)	133, 169, 598, 603
Bst6I	CTCTTC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	564
BstBI	TTCGAA	2 cut(s)	106, 461
BstC8I	GCNNGC	2 cut(s)	124, 451
BstDEI	CTNAG	3 cut(s)	39, 402, 623
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	180, 594
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	1 cut(s)	552
BstMAI	GTCTC	2 cut(s)	245, 260
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 284, 437, 446, 455, 675
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	3 cut(s)	339, 393, 658
BstSCI	CCNGG	3 cut(s)	441, 442, 583
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	290, 656
BstXI	CCANNNNNNTGG	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	632
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	180, 594
BtsI	GCAGTG	3 cut(s)	270, 552, 679
BtsIMutI	CAGTG	5 cut(s)	165, 270, 410, 552, 679
Cac8I	GCNNGC	2 cut(s)	124, 451
Cfr9I	CCCGGG	1 cut(s)	442
Csp6I	GTAC	3 cut(s)	508, 565, 599
CviAII	CATG	8 cut(s)	14, 172, 336, 375, 385, 390, 437, 655
CviQI	GTAC	3 cut(s)	508, 565, 599
DdeI	CTNAG	3 cut(s)	39, 402, 623
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
DraIII	CACNNNGTG	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	583
FaeI	CATG	8 cut(s)	17, 175, 339, 378, 388, 393, 440, 658
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	8 cut(s)	13, 171, 335, 374, 384, 389, 436, 654
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	276, 279, 432, 670
FokI	GGATG	2 cut(s)	167, 601
Fsp4HI	GCNGC	4 cut(s)	276, 279, 432, 670
GluI	GCNGC	4 cut(s)	276, 279, 432, 670
HapII	CCGG	2 cut(s)	341, 443
Hin1II	CATG	8 cut(s)	17, 175, 339, 378, 388, 393, 440, 658
HinfI	GANTC	4 cut(s)	17, 114, 308, 537
HpaII	CCGG	2 cut(s)	341, 443
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	510, 620, 632
Hpy188I	TCNGA	1 cut(s)	626
Hpy8I	GTNNAC	3 cut(s)	510, 620, 632
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	4 cut(s)	133, 169, 598, 603
HpyCH4V	TGCA	6 cut(s)	13, 86, 122, 384, 545, 672
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 284, 437, 446, 455, 675
HpyF3I	CTNAG	3 cut(s)	39, 402, 623
Hsp92II	CATG	8 cut(s)	17, 175, 339, 378, 388, 393, 440, 658
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	292, 446
LpnPI	CCDG	9 cut(s)	108, 111, 189, 237, 354, 381, 456, 570, 597
Lsp1109I	GCAGC	2 cut(s)	290, 656
LweI	GCATC	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	1 cut(s)	120
MluCI	AATT	2 cut(s)	149, 301
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	240, 514
MnlI	CCTC	7 cut(s)	34, 104, 300, 382, 620, 642, 654
MslI	CAYNNNNRTG	2 cut(s)	170, 545
MspI	CCGG	2 cut(s)	341, 443
MspR9I	CCNGG	3 cut(s)	443, 444, 585
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	6 cut(s)	209, 284, 437, 446, 455, 675
NciI	CCSGG	2 cut(s)	443, 444
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	8 cut(s)	17, 175, 339, 378, 388, 393, 440, 658
NlaIV	GGNNCC	1 cut(s)	595
NspI	RCATGY	3 cut(s)	339, 393, 658
NspV	TTCGAA	2 cut(s)	106, 461
PciI	ACATGT	3 cut(s)	335, 389, 654
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	3 cut(s)	17, 308, 537
PkrI	GCNGC	4 cut(s)	277, 280, 433, 671
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PscI	ACATGT	3 cut(s)	335, 389, 654
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	509, 566, 600
RsaNI	GTAC	3 cut(s)	508, 565, 599
RseI	CAYNNNNRTG	2 cut(s)	170, 545
SatI	GCNGC	4 cut(s)	276, 279, 432, 670
Sau3AI	GATC	1 cut(s)	549
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	443, 444, 585
SetI	ASST	5 cut(s)	283, 403, 451, 586, 631
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	670
SfuI	TTCGAA	2 cut(s)	106, 461
SmaI	CCCGGG	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	170, 545
Sse9I	AATT	2 cut(s)	149, 301
SsiI	CCGC	2 cut(s)	275, 431
StyD4I	CCNGG	3 cut(s)	441, 442, 583
TaaI	ACNGT	4 cut(s)	133, 169, 598, 603
TaqI	TCGA	3 cut(s)	24, 106, 461
TasI	AATT	2 cut(s)	149, 301
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	2 cut(s)	278, 434
TfiI	GAWTC	3 cut(s)	17, 308, 537
TscAI	CASTG	5 cut(s)	172, 277, 410, 552, 679
TseI	GCWGC	2 cut(s)	278, 669
TspDTI	ATGAA	3 cut(s)	17, 30, 529
TspMI	CCCGGG	1 cut(s)	442
TspRI	CASTG	5 cut(s)	172, 277, 410, 552, 679
XceI	RCATGY	3 cut(s)	339, 393, 658
XmaI	CCCGGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.