RchiOBHm_Chr1g0371421

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019730
Physical Location & Seq
Reverse (-)
60614701 .. 60615553
853 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGACTTCCTTCAAAGAAAAAGTGGACGTTTTCAAAGCATGGAGCAGAAAGCCATTGAAGATGCTTCATTTTCTGTGGTTCATCTGTGTTTGTATTTCATTTATATGCATGCTTGTTCTCCTGAGTGGATTGTTGAAACACAGACTAGTAACCAAGTCCCAGCACGATTTGTGGTTCGAAGTAAATGTCCAAATTATCAATTTACTTTTCACCATTTTGTGTTTGTACCAGCATCCAAGGTGGTGCCAGCACCTTTTTCTGCTGTGCAGATGGAGACCAGAAGATGCTTCAAAGCTTCGAAGGTTTTACTGCAAAATTGGGAAAGAGAAGCCGCATGAACGGGCACACATGGTGACCATTGTCATTCTGTTCCAAGTGACCTGTTTTTCACAATACATTGTTTGTGGTTTACACTGGGGTTACAGCATTTCTGAACGACCTTTTGAAGCAATTGGAATAAGTTTATTGATTACTATAAGTTCAGTTATAATTGCTGTTCTATACAAAACTTTCGGCCCCCTGCAAAAGGAGGATCCTAATTCCGGCGTGGATGTGGAAGCGCCTGGCTGCGAAGGCAACCTCCCCAGAACCCCAATTTTTAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

202

Amino Acids

23.52

Weight (kDa)

9.13

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2985 PF11204 14 - 91 2e-15 Protein of unknown function (DUF2985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019730)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25460
rosa_chinensis RchiOBHm_Chr1g0371421
rosa_laevigata RLG00000026964
rosa_samantha Rh1AG374000 Rh1BG337400 Rh1CG350700 Rh1DG368400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 243
AciI CCGC 1 cut(s) 332
AclWI GGATC 2 cut(s) 527, 540
AdeI CACNNNGTG 1 cut(s) 352
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 526, 542
AgsI TTSAA 6 cut(s) 13, 34, 58, 136, 291, 446
AhlI ACTAGT 1 cut(s) 145
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 2 cut(s) 527, 540
AoxI GGCC 2 cut(s) 514, 603
ApeKI GCWGC 1 cut(s) 567
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 515
AsuHPI GGTGA 2 cut(s) 202, 364
AsuII TTCGAA 2 cut(s) 177, 298
BaeGI GKGCMC 1 cut(s) 346
BamHI GGATCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 554
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 268
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 563
BisI GCNGC 2 cut(s) 332, 568
BlsI GCNGC 2 cut(s) 333, 569
Bme1390I CCNGG 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 3 cut(s) 245, 517, 534
BmrFI CCNGG 1 cut(s) 564
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 3 cut(s) 51, 241, 274
BmuI ACTGGG 1 cut(s) 424
BoxI GACNNNNGTC 1 cut(s) 359
Bpu14I TTCGAA 2 cut(s) 177, 298
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 542
Bse1I ACTGG 1 cut(s) 419
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 232, 556
BseLI CCNNNNNNNGG 2 cut(s) 526, 542
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 1 cut(s) 554
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 2 cut(s) 516, 605
BshNI GGYRCC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 526, 542
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 516, 605
Bso31I GGTCTC 1 cut(s) 268
Bsp119I TTCGAA 2 cut(s) 177, 298
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 1 cut(s) 332
BspANI GGCC 2 cut(s) 516, 605
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 245, 517, 534
BspPI GGATC 2 cut(s) 527, 540
BspT104I TTCGAA 2 cut(s) 177, 298
BspT107I GGYRCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 564
BstBI TTCGAA 2 cut(s) 177, 298
BstC8I GCNNGC 2 cut(s) 110, 248
BstDEI CTNAG 1 cut(s) 122
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 232, 556
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 359
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 2 cut(s) 516, 605
BtsCI GGATG 2 cut(s) 232, 556
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 110, 248
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 39, 109, 335, 349
CviJI RGCY 6 cut(s) 52, 295, 331, 516, 567, 605
CviKI_1 RGCY 6 cut(s) 52, 295, 331, 516, 567, 605
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
DraIII CACNNNGTG 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 236
Eco147I AGGCCT 1 cut(s) 605
Eco31I GGTCTC 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 4 cut(s) 42, 112, 338, 352
FaiI YATR 9 cut(s) 40, 104, 106, 110, 336, 350, 476, 488, 502
FaqI GGGAC 1 cut(s) 142
FatI CATG 4 cut(s) 38, 108, 334, 348
Fnu4HI GCNGC 2 cut(s) 332, 568
FokI GGATG 2 cut(s) 219, 563
Fsp4HI GCNGC 2 cut(s) 332, 568
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 332, 568
GsaI CCCAGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 2 cut(s) 516, 605
HapII CCGG 1 cut(s) 543
HhaI GCGC 1 cut(s) 562
Hin1II CATG 4 cut(s) 42, 112, 338, 352
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HindIII AAGCTT 1 cut(s) 293
HpaII CCGG 1 cut(s) 543
HphI GGTGA 2 cut(s) 202, 364
Hpy166II GTNNAC 2 cut(s) 25, 410
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 25, 410
HpyAV CCTTC 3 cut(s) 19, 294, 566
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 108, 267, 312, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 42, 112, 338, 352
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 3 cut(s) 51, 241, 274
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 4 cut(s) 148, 352, 376, 419
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 2 cut(s) 70, 293
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 7 cut(s) 192, 199, 315, 450, 489, 538, 594
MnlI CCTC 2 cut(s) 523, 590
Mph1103I ATGCAT 1 cut(s) 110
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 573
NdeII GATC 1 cut(s) 532
NlaIII CATG 4 cut(s) 42, 112, 338, 352
NlaIV GGNNCC 3 cut(s) 245, 517, 534
NmuCI GTSAC 2 cut(s) 352, 376
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 1 cut(s) 112
NspV TTCGAA 2 cut(s) 177, 298
PaeI GCATGC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 605
PkrI GCNGC 2 cut(s) 333, 569
PshAI GACNNNNGTC 1 cut(s) 359
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 562
PspEI GGTNACC 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 3 cut(s) 245, 517, 534
PspPI GGNCC 1 cut(s) 515
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 2 cut(s) 332, 568
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 1 cut(s) 346
SetI ASST 8 cut(s) 30, 242, 255, 297, 305, 383, 442, 582
SfaNI GCATC 3 cut(s) 51, 241, 274
SfuI TTCGAA 2 cut(s) 177, 298
SmiMI CAYNNNNRTG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 145
SphI GCATGC 1 cut(s) 112
Sse9I AATT 7 cut(s) 192, 199, 315, 450, 489, 538, 594
SseBI AGGCCT 1 cut(s) 605
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 146
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 177, 298
TasI AATT 7 cut(s) 192, 199, 315, 450, 489, 538, 594
TauI GCSGC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 2 cut(s) 352, 376
TseI GCWGC 1 cut(s) 567
Tsp45I GTSAC 2 cut(s) 352, 376
TspDTI ATGAA 4 cut(s) 56, 70, 87, 351
TspRI CASTG 1 cut(s) 419
XagI CCTNNNNNAGG 1 cut(s) 524
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.