RchiOBHm_Chr1g0313701

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024772
Physical Location & Seq
Forward (+)
797095 .. 798823
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54451

Sequence Viewer

Length: 372 bp
ATGGCATTTGGAGGTTCTGTGTTCTTGTCTGTGCTCCTAGCTTTAGCTGCAGCTGCCAGCGTCTCCGTTGGCAATTCCCATGCTTATTATATCCCATTTAACCGAAGTAGTTTTCCGAGTGGATTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTTCTACATGGAAGGGGACCTAGCATCTGGGATACTTTCGTTAGGAAAAATCCAGAAAAGATATCAGATCACAGCACCGGAGACGTAGCTAATGACTTTTATCACCACTATAAGGAGGATATAAAATTGATGAAGAAAATTGGGTTGGACACCTTCAGAATGTCAATTTCATGGACAAGATTACTTCCCAGGAAAACTTAG

Protein Analysis

123

Amino Acids

13.51

Weight (kDa)

9.52

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 36 - 121 5.3e-32 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024772)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0313701
rosa_samantha Rh1AG005900 Rh1AG006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 283
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 5 cut(s) 41, 47, 53, 146, 260
AluI AGCT 5 cut(s) 41, 47, 53, 146, 260
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 67, 246
ApeKI GCWGC 5 cut(s) 47, 50, 53, 146, 167
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 5 cut(s) 34, 40, 62, 133, 179
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 67, 246
BfaI CTAG 2 cut(s) 38, 192
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 5 cut(s) 48, 51, 54, 147, 168
BlsI GCNGC 5 cut(s) 49, 52, 55, 148, 169
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 283
BseXI GCAGC 5 cut(s) 34, 40, 62, 133, 179
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 67, 246
BsmBI CGTCTC 2 cut(s) 67, 246
BsmFI GGGAC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 369
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 67, 246
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 47, 53, 143
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 5 cut(s) 34, 40, 62, 133, 179
BsuI GTATCC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 1 cut(s) 49
CviAII CATG 3 cut(s) 80, 179, 342
CviJI RGCY 5 cut(s) 41, 47, 53, 146, 260
CviKI_1 RGCY 5 cut(s) 41, 47, 53, 146, 260
DdeI CTNAG 1 cut(s) 369
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 234
Esp3I CGTCTC 2 cut(s) 67, 246
FaeI CATG 3 cut(s) 83, 182, 345
FaiI YATR 6 cut(s) 81, 90, 180, 282, 293, 343
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 79, 178, 341
Fnu4HI GCNGC 5 cut(s) 48, 51, 54, 147, 168
Fsp4HI GCNGC 5 cut(s) 48, 51, 54, 147, 168
FspBI CTAG 2 cut(s) 38, 192
GluI GCNGC 5 cut(s) 48, 51, 54, 147, 168
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 49
Hin1II CATG 3 cut(s) 83, 182, 345
HinfI GANTC 1 cut(s) 123
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 4 cut(s) 117, 160, 238, 329
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 155, 177, 334
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 53, 143
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 83, 182, 345
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 39, 164
LpnPI CCDG 6 cut(s) 70, 123, 184, 237, 262, 346
Lsp1109I GCAGC 5 cut(s) 34, 40, 62, 133, 179
LweI GCATC 1 cut(s) 204
MaeI CTAG 2 cut(s) 38, 192
MaeII ACGT 1 cut(s) 255
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 4 cut(s) 73, 296, 309, 336
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 2 cut(s) 5, 280
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 53, 146
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 3 cut(s) 47, 53, 143
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 83, 182, 345
NlaIV GGNNCC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 5 cut(s) 49, 52, 55, 148, 169
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 2 cut(s) 53, 146
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 5 cut(s) 48, 51, 54, 147, 168
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 16, 43, 49, 55, 148, 193, 258, 262, 326
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 188
Sse9I AATT 4 cut(s) 73, 296, 309, 336
SspMI CTAG 2 cut(s) 38, 192
StyD4I CCNGG 1 cut(s) 359
TaiI ACGT 1 cut(s) 258
TasI AATT 4 cut(s) 73, 296, 309, 336
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 5 cut(s) 47, 50, 53, 146, 167
TspDTI ATGAA 2 cut(s) 317, 330
TspGWI ACGGA 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 188
XspI CTAG 2 cut(s) 38, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.