Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0024772

Physical Location & Seq

Genomic Coordinates Forward (+)

794516 .. 803477

Gene Structure 8962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCATTTGGAGGTTCTGTGTTCTTGTCTGTGCTCCTAGCTTTAGCTGCAGCTGCCAGCGTCTCCGTTGGCAATTCCCATGCTTATTATATCCCATTTAACCGAAGTAGTTTTCCGAGTGGATTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTTCTACATGGAAGGGGACCTAGCATCTGGGATACTTTCGTTAGGAAAAATCCAGGATATTCATATGGATATAATGCCTCAATGCCAATTCAAGAAGCTCGTAAGGATAATTTGAGAATAAGATACCATCACGACCATCTGTGGTATCTTTTGAAAGCTATTAAGGATGGGGTTAAAGTGAAGGGATACTATGCATGGTCATTTTTTGATGACTTCGAATGGGATGCCGGTTACACAGTTGGGTTTGGCCTAACATTAGTTGATGTCAATGATAATCTGAGAAGATACCTCAAATATTCTGCCTATTGGTTCAAGATGTTCCTCCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

9.2

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	36 - 80	1.1e-10	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	89 - 163	5.9e-22	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024772)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313701
rosa_samantha	Rh1AG005900 Rh1AG006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	263, 325, 484
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	6 cut(s)	41, 47, 53, 146, 269, 329
AluI	AGCT	6 cut(s)	41, 47, 53, 146, 269, 329
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	47, 50, 53, 146, 167
AspS9I	GGNCC	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	5 cut(s)	34, 40, 62, 133, 179
BccI	CCATC	3 cut(s)	306, 315, 332
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	2 cut(s)	196, 350
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	38, 192
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	2 cut(s)	196, 350
BisI	GCNGC	5 cut(s)	48, 51, 54, 147, 168
BlsI	GCNGC	5 cut(s)	49, 52, 55, 148, 169
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	204, 385
Bpu14I	TTCGAA	1 cut(s)	387
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	343, 400
BseMII	CTCAG	1 cut(s)	440
BseXI	GCAGC	5 cut(s)	34, 40, 62, 133, 179
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	409
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	343, 400
BstMAI	GTCTC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 53, 143
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	5 cut(s)	34, 40, 62, 133, 179
BsuI	GTATCC	2 cut(s)	196, 350
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	343, 400
BtsIMutI	CAGTG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	49
CviAII	CATG	3 cut(s)	80, 179, 366
CviJI	RGCY	7 cut(s)	41, 47, 53, 146, 269, 329, 420
CviKI_1	RGCY	7 cut(s)	41, 47, 53, 146, 269, 329, 420
DdeI	CTNAG	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	3 cut(s)	83, 182, 369
FaiI	YATR	8 cut(s)	81, 90, 180, 235, 237, 243, 363, 367
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	3 cut(s)	79, 178, 365
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	48, 51, 54, 147, 168
FokI	GGATG	2 cut(s)	350, 407
Fsp4HI	GCNGC	5 cut(s)	48, 51, 54, 147, 168
FspBI	CTAG	2 cut(s)	38, 192
GluI	GCNGC	5 cut(s)	48, 51, 54, 147, 168
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	49
Hin1II	CATG	3 cut(s)	83, 182, 369
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	117, 160, 450
Hpy188III	TCNNGA	3 cut(s)	263, 302, 484
HpyAV	CCTTC	3 cut(s)	155, 177, 346
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	50, 365, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 53, 143
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	83, 182, 369
LmnI	GCTCC	2 cut(s)	39, 164
LpnPI	CCDG	6 cut(s)	70, 123, 184, 210, 237, 412
Lsp1109I	GCAGC	5 cut(s)	34, 40, 62, 133, 179
LweI	GCATC	2 cut(s)	204, 385
MaeI	CTAG	2 cut(s)	38, 192
MaeIII	GTNAC	1 cut(s)	401
MboII	GAAGA	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	3 cut(s)	73, 258, 280
MnlI	CCTC	4 cut(s)	5, 259, 470, 503
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	3 cut(s)	99, 333, 345
MspA1I	CMGCKG	2 cut(s)	53, 146
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	47, 53, 143
NdeI	CATATG	1 cut(s)	235
NlaIII	CATG	3 cut(s)	83, 182, 369
NlaIV	GGNNCC	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	49, 52, 55, 148, 169
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	52
PvuII	CAGCTG	2 cut(s)	53, 146
SaqAI	TTAA	3 cut(s)	99, 333, 345
SatI	GCNGC	5 cut(s)	48, 51, 54, 147, 168
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	9 cut(s)	16, 43, 49, 55, 148, 193, 271, 331, 462
SfaNI	GCATC	2 cut(s)	204, 385
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	3 cut(s)	73, 258, 280
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	2 cut(s)	38, 192
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	73, 258, 280
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	99, 333, 345
Tru9I	TTAA	3 cut(s)	99, 333, 345
TseI	GCWGC	5 cut(s)	47, 50, 53, 146, 167
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	188
XspI	CTAG	2 cut(s)	38, 192
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.