Rh1AG006100

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
823771 .. 828688
4918 bp
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UTR
Exon/CDS
Intron
Rh1AG006100.1

Sequence Viewer

Length: 504 bp
ATGGCATTTGGAGGTTCTGTGTTCTTGTCTATGCTCCTATCTTTGGCTGCAGCTGCTTGCTTCTCCGTTGGCACTTCCGATGCTTATTATATCCCTTTCAACCGAAGCAGTTTTCCCACTGGATTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTTCTAGATGGAAGGGGACCTAGCATCTGGGATACTTTCGTTAGGAAACATCCAGGATATGCGTATGGATATAATGCCTCAATGCCAATTCAAGAAGCTCGTAAGGATAATTTGAGAATAAGATACCATCACGACCATCTGTGGTATCTTTTGAAAGCTATCAAGGATGGGGTTAAAGTAAAGGGATACTATGCGTGGTCATTTTGGGATGACTTCGAATGGGATGCTGGTTACACAGTTGGGTTTGGCCTAACATTAGTTGATGTCAAGGATAATCTGAGAAGATACCTCAAATATTCTGCCTATTGGTTCAAGATGTTCCTCCTGCACTGA

Protein Analysis

167

Amino Acids

19.05

Weight (kDa)

8.87

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 36 - 80 1.7e-11 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 89 - 163 2.5e-21 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024772)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0313701
rosa_samantha Rh1AG005900 Rh1AG006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 100, 263, 325, 484
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 4 cut(s) 53, 146, 269, 329
AluI AGCT 4 cut(s) 53, 146, 269, 329
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 5 cut(s) 47, 50, 53, 146, 167
AspS9I GGNCC 1 cut(s) 188
AsuII TTCGAA 1 cut(s) 387
AvaII GGWCC 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BbvI GCAGC 5 cut(s) 34, 40, 62, 133, 179
BccI CCATC 4 cut(s) 173, 306, 315, 332
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 2 cut(s) 196, 350
BfaI CTAG 2 cut(s) 176, 192
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 2 cut(s) 196, 350
BisI GCNGC 5 cut(s) 48, 51, 54, 147, 168
BlsI GCNGC 5 cut(s) 49, 52, 55, 148, 169
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 3 cut(s) 70, 204, 385
Bpu14I TTCGAA 1 cut(s) 387
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 225
BseGI GGATG 4 cut(s) 220, 343, 385, 400
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 5 cut(s) 34, 40, 62, 133, 179
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 420
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 387
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 409
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 449
BstF5I GGATG 4 cut(s) 220, 343, 385, 400
BstMWI GCNNNNNNNGC 2 cut(s) 53, 143
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 5 cut(s) 34, 40, 62, 133, 179
BsuI GTATCC 2 cut(s) 196, 350
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 4 cut(s) 220, 343, 385, 400
BtsIMutI CAGTG 2 cut(s) 117, 499
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 188
CviJI RGCY 6 cut(s) 47, 53, 146, 269, 329, 420
CviKI_1 RGCY 6 cut(s) 47, 53, 146, 269, 329, 420
DdeI CTNAG 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 223
FaiI YATR 6 cut(s) 32, 90, 231, 237, 243, 363
FaqI GGGAC 1 cut(s) 201
Fnu4HI GCNGC 5 cut(s) 48, 51, 54, 147, 168
FokI GGATG 4 cut(s) 207, 350, 392, 407
Fsp4HI GCNGC 5 cut(s) 48, 51, 54, 147, 168
FspBI CTAG 2 cut(s) 176, 192
GluI GCNGC 5 cut(s) 48, 51, 54, 147, 168
HaeIII GGCC 1 cut(s) 420
HinfI GANTC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 79, 160, 450
Hpy188III TCNNGA 4 cut(s) 176, 263, 302, 484
HpyAV CCTTC 2 cut(s) 155, 177
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 50, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 143
HpyF3I CTNAG 1 cut(s) 449
LmnI GCTCC 2 cut(s) 39, 164
LpnPI CCDG 6 cut(s) 105, 123, 184, 210, 237, 384
Lsp1109I GCAGC 5 cut(s) 34, 40, 62, 133, 179
LweI GCATC 3 cut(s) 70, 204, 385
MaeI CTAG 2 cut(s) 176, 192
MaeIII GTNAC 1 cut(s) 401
MboII GAAGA 1 cut(s) 465
MluCI AATT 2 cut(s) 258, 280
MnlI CCTC 4 cut(s) 5, 259, 470, 503
MseI TTAA 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 53, 146
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 53, 143
NlaIV GGNNCC 1 cut(s) 189
NspV TTCGAA 1 cut(s) 387
PfeI GAWTC 1 cut(s) 123
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 5 cut(s) 49, 52, 55, 148, 169
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 2 cut(s) 53, 146
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 5 cut(s) 48, 51, 54, 147, 168
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 225
SetI ASST 7 cut(s) 16, 55, 148, 193, 271, 331, 462
SfaNI GCATC 3 cut(s) 70, 204, 385
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 387
SinI GGWCC 1 cut(s) 188
Sse9I AATT 2 cut(s) 258, 280
SspI AATATT 1 cut(s) 467
SspMI CTAG 2 cut(s) 176, 192
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 387
TasI AATT 2 cut(s) 258, 280
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 124
TseI GCWGC 5 cut(s) 47, 50, 53, 146, 167
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 175
XspI CTAG 2 cut(s) 176, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.